Xenbase Image ID: 133949

Figure 2. Expression pattern of genes regulated by Rx1. In situ hybridizations performed on whole mount (stage 13, early neurula; stage 16, mid-neurula; stage 19, late neurula; stage 27, early tailbud; stage 33, late tailbud), and on cryo-sections (stage 42, early tadpole, detail of the retina). Stage 13–19 embryos are frontal views with dorsal to the top. Stage 27 and 33 embryos are lateral views with dorsal to the top and anterior to the left.Download figure to PowerPoint Image published in: Giudetti G et al. (2014) Copyright © 2014. Image reproduced with permission of the Publisher, John Wiley & Sons. Gene Synonyms Species Stage(s) Tissue rax.L rax1, rax-a, rax-b, rx, rx-1, rx1, rx1a, Rx2A, Xrax, Xrx1, Xrx1A X. laevis Throughout NF stage 13 optic field pre-chordal neural plate efnb1.L cfnd, cfns, efl3, elk-l, ephrinB1, eplg2, lerk2 X. laevis Throughout NF stage 13 neural plate pre-chordal neural plate chordal neural plate fat1.L cdhf7, LOC108706612, LOC108719599, me5 X. laevis Throughout NF stage 13 neural plate pre-chordal neural plate neural groove neural plate border anterior neural ridge optic field sh2d3c.L pro34088 X. laevis Throughout NF stage 13 neural plate chordal neural plate anterior neural ridge bzw2.L X. laevis Throughout NF stage 13 neural plate pre-chordal neural plate anterior neural ridge slc25a17.L pmp34, slc25a17-a, slc25a17-b X. laevis Throughout NF stage 13 neural plate chordal neural plate neural plate border tcf3.L bhlhb21, E12, e2a, itf1, tcf-3, tcfe2a, vdir, XE12, xtcf-3, xtcf3 X. laevis Throughout NF stage 13 neural plate pre-chordal neural plate chordal neural plate rab11fip4.L LOC108701226, LOC108702867, rab11-fip4 X. laevis Throughout NF stage 13 neural plate pre-chordal neural plate chordal neural plate neural plate border rbfox2.S fox-2, fox2, fxh, hnrbp2, hrnbp2, rbm9, rta, xrbm9 X. laevis Throughout NF stage 13 pre-chordal neural plate border chordal neural plate border hey1.L bc8, chf2, herp2, hesr1, hrt-1, hrt1, oaf1, XHRT1 X. laevis Throughout NF stage 13 axial mesoderm rax.L rax1, rax-a, rax-b, rx, rx-1, rx1, rx1a, Rx2A, Xrax, Xrx1, Xrx1A X. laevis Throughout NF stage 16 eye primordium pre-chordal neural plate efnb1.L cfnd, cfns, efl3, elk-l, ephrinB1, eplg2, lerk2 X. laevis Throughout NF stage 16 anterior neural fold anterior neural ridge pre-chordal neural plate border neural crest cranial neural crest eye primordium fat1.L cdhf7, LOC108706612, LOC108719599, me5 X. laevis Throughout NF stage 16 eye primordium neural plate pre-chordal neural plate neural groove sh2d3c.L pro34088 X. laevis Throughout NF stage 16 eye primordium neural plate pre-chordal neural plate chordal neural plate bzw2.L X. laevis Throughout NF stage 16 neural plate pre-chordal neural plate neural plate border anterior neural ridge anterior neural fold neural groove slc25a17.L pmp34, slc25a17-a, slc25a17-b X. laevis Throughout NF stage 16 neural plate pre-chordal neural plate chordal neural plate neural plate border anterior neural ridge cement gland primordium tcf3.L bhlhb21, E12, e2a, itf1, tcf-3, tcfe2a, vdir, XE12, xtcf-3, xtcf3 X. laevis Throughout NF stage 16 neural plate pre-chordal neural plate chordal neural plate neural groove anterior neural fold rab11fip4.L LOC108701226, LOC108702867, rab11-fip4 X. laevis Throughout NF stage 16 neural plate chordal neural plate pre-chordal neural plate eye primordium rbfox2.S fox-2, fox2, fxh, hnrbp2, hrnbp2, rbm9, rta, xrbm9 X. laevis Throughout NF stage 16 neural plate pre-chordal neural plate chordal neural plate anterior neural fold neural fold nek2.L nek2a X. laevis Throughout NF stage 16 eye primordium neural plate pre-chordal neural plate hey1.L bc8, chf2, herp2, hesr1, hrt-1, hrt1, oaf1, XHRT1 X. laevis Throughout NF stage 16 axial mesoderm paraxial mesoderm presomitic mesoderm rax.L rax1, rax-a, rax-b, rx, rx-1, rx1, rx1a, Rx2A, Xrax, Xrx1, Xrx1A X. laevis Throughout NF stage 19 retina optic vesicle efnb1.L cfnd, cfns, efl3, elk-l, ephrinB1, eplg2, lerk2 X. laevis Throughout NF stage 19 optic vesicle neural plate pre-chordal neural plate neural crest cranial neural crest fat1.L cdhf7, LOC108706612, LOC108719599, me5 X. laevis Throughout NF stage 19 neural plate pre-chordal neural plate neural groove optic vesicle sh2d3c.L pro34088 X. laevis Throughout NF stage 19 optic vesicle neural plate pre-chordal neural plate chordal neural plate bzw2.L X. laevis Throughout NF stage 19 neural plate pre-chordal neural plate chordal neural plate neural groove anterior neural fold anterior neural ridge optic vesicle branchial crest slc25a17.L pmp34, slc25a17-a, slc25a17-b X. laevis Throughout NF stage 19 neural plate pre-chordal neural plate chordal neural plate neural plate border cement gland primordium tcf3.L bhlhb21, E12, e2a, itf1, tcf-3, tcfe2a, vdir, XE12, xtcf-3, xtcf3 X. laevis Throughout NF stage 19 optic vesicle neural plate pre-chordal neural plate chordal neural plate neural crest cranial neural crest rab11fip4.L LOC108701226, LOC108702867, rab11-fip4 X. laevis Throughout NF stage 19 neural plate pre-chordal neural plate chordal neural plate optic vesicle rbfox2.S fox-2, fox2, fxh, hnrbp2, hrnbp2, rbm9, rta, xrbm9 X. laevis Throughout NF stage 19 neural plate pre-chordal neural plate chordal neural plate neural fold anterior neural fold nek2.L nek2a X. laevis Throughout NF stage 19 optic vesicle neural plate pre-chordal neural plate neural plate border hey1.L bc8, chf2, herp2, hesr1, hrt-1, hrt1, oaf1, XHRT1 X. laevis Throughout NF stage 19 axial mesoderm paraxial mesoderm presomitic mesoderm head somite head somite 1 head somite 2 head somite 3 head somite 4 rax.L rax1, rax-a, rax-b, rx, rx-1, rx1, rx1a, Rx2A, Xrax, Xrx1, Xrx1A X. laevis Throughout NF stage 27 retina optic vesicle pineal gland efnb1.L cfnd, cfns, efl3, elk-l, ephrinB1, eplg2, lerk2 X. laevis Throughout NF stage 27 forebrain telencephalon head mesenchyme head region neural crest cranial neural crest lateral plate mesoderm liver primordium fat1.L cdhf7, LOC108706612, LOC108719599, me5 X. laevis Throughout NF stage 27 optic vesicle head region head mesenchyme spinal cord otic vesicle sh2d3c.L pro34088 X. laevis Throughout NF stage 27 retina optic vesicle neural tube anterior neural tube posterior neural tube brain forebrain midbrain hindbrain bzw2.L X. laevis Throughout NF stage 27 retina optic vesicle neural crest cranial neural crest slc25a17.L pmp34, slc25a17-a, slc25a17-b X. laevis Throughout NF stage 27 head region otic vesicle neural crest cranial neural crest lateral plate mesoderm cement gland primordium tcf3.L bhlhb21, E12, e2a, itf1, tcf-3, tcfe2a, vdir, XE12, xtcf-3, xtcf3 X. laevis Throughout NF stage 27 optic vesicle head region neural crest cranial neural crest branchial arch rab11fip4.L LOC108701226, LOC108702867, rab11-fip4 X. laevis Throughout NF stage 27 optic vesicle pineal gland hindbrain rbfox2.S fox-2, fox2, fxh, hnrbp2, hrnbp2, rbm9, rta, xrbm9 X. laevis Throughout NF stage 27 optic vesicle forebrain telencephalon neural crest cranial neural crest cardiac neural crest somite head somite trunk somite nek2.L nek2a X. laevis Throughout NF stage 27 optic vesicle otic vesicle hey1.L bc8, chf2, herp2, hesr1, hrt-1, hrt1, oaf1, XHRT1 X. laevis Throughout NF stage 27 optic vesicle olfactory bulb hindbrain neural crest cranial neural crest somite head somite trunk somite rax.L rax1, rax-a, rax-b, rx, rx-1, rx1, rx1a, Rx2A, Xrax, Xrx1, Xrx1A X. laevis Throughout NF stage 33 and 34 eye retina pineal gland efnb1.L cfnd, cfns, efl3, elk-l, ephrinB1, eplg2, lerk2 X. laevis Throughout NF stage 33 and 34 head region neural crest cranial neural crest lateral plate mesoderm liver primordium fat1.L cdhf7, LOC108706612, LOC108719599, me5 X. laevis Throughout NF stage 33 and 34 eye retina head region head mesenchyme spinal cord kidney pronephric kidney sh2d3c.L pro34088 X. laevis Throughout NF stage 33 and 34 eye retina head region bzw2.L X. laevis Throughout NF stage 33 and 34 cranial neural crest mandibular crest hyoid crest endoderm olfactory bulb slc25a17.L pmp34, slc25a17-a, slc25a17-b X. laevis Throughout NF stage 33 and 34 eye neural crest cranial neural crest otic vesicle lateral plate mesoderm tcf3.L bhlhb21, E12, e2a, itf1, tcf-3, tcfe2a, vdir, XE12, xtcf-3, xtcf3 X. laevis Throughout NF stage 33 and 34 eye retina otic vesicle cranial neural crest mandibular crest hyoid crest brain forebrain midbrain forebrain-midbrain boundary rab11fip4.L LOC108701226, LOC108702867, rab11-fip4 X. laevis Throughout NF stage 33 and 34 eye retina forebrain telencephalon hindbrain rbfox2.S fox-2, fox2, fxh, hnrbp2, hrnbp2, rbm9, rta, xrbm9 X. laevis Throughout NF stage 33 and 34 neural crest cranial neural crest cardiac neural crest hyoid crest endoderm forebrain telencephalon retina nek2.L nek2a X. laevis Throughout NF stage 33 and 34 head region hey1.L bc8, chf2, herp2, hesr1, hrt-1, hrt1, oaf1, XHRT1 X. laevis Throughout NF stage 33 and 34 olfactory bulb eye cranial neural crest hyoid crest mandibular crest somite head somite trunk somite hindbrain rax.L rax1, rax-a, rax-b, rx, rx-1, rx1, rx1a, Rx2A, Xrax, Xrx1, Xrx1A X. laevis Throughout NF stage 42 retina ciliary marginal zone retinal neural layer efnb1.L cfnd, cfns, efl3, elk-l, ephrinB1, eplg2, lerk2 X. laevis Throughout NF stage 42 retina ciliary marginal zone retinal neural layer fat1.L cdhf7, LOC108706612, LOC108719599, me5 X. laevis Throughout NF stage 42 retina retinal inner plexiform layer retinal outer plexiform layer sh2d3c.L pro34088 X. laevis Throughout NF stage 42 retina retinal neural layer retinal inner plexiform layer retinal outer plexiform layer bzw2.L X. laevis Throughout NF stage 42 retina ciliary marginal zone slc25a17.L pmp34, slc25a17-a, slc25a17-b X. laevis Throughout NF stage 42 retina ciliary marginal zone lens lens fiber cell mass tcf3.L bhlhb21, E12, e2a, itf1, tcf-3, tcfe2a, vdir, XE12, xtcf-3, xtcf3 X. laevis Throughout NF stage 42 retina ciliary marginal zone rbfox2.S fox-2, fox2, fxh, hnrbp2, hrnbp2, rbm9, rta, xrbm9 X. laevis Throughout NF stage 42 eye retina ciliary marginal zone retinal neural layer lens lens fiber cell mass lens transitional zone nek2.L nek2a X. laevis Throughout NF stage 42 eye lens lens fiber cell mass retina ciliary marginal zone retinal neural layer Image source: Published Larger Image Printer Friendly View

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