Koji Tamura - Publications

Publications (41)

XB-PERS-1957

Publications By Koji Tamura

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hoxc12/c13 as key regulators for rebooting the developmental program in Xenopus limb regeneration., Kawasumi-Kita A, Lee SW, Ohtsuka D, Niimi K, Asakura Y, Kitajima K, Sakane Y, Tamura K, Ochi H, Suzuki KT, Morishita Y., Nat Commun. April 22, 2024; 15 (1): 3340.
An archetype and scaling of developmental tissue dynamics across species., Morishita Y, Lee SW, Suzuki T, Yokoyama H, Kamei Y, Tamura K, Kawasumi-Kita A., Nat Commun. December 11, 2023; 14 (1): 8199.
The shh limb enhancer is activated in patterned limb regeneration but not in hypomorphic limb regeneration in Xenopus laevis., Tada R, Higashidate T, Amano T, Ishikawa S, Yokoyama C, Kobari S, Nara S, Ishida K, Kawaguchi A, Ochi H, Ogino H, Yakushiji-Kaminatsui N, Sakamoto J, Kamei Y, Tamura K, Yokoyama H., Dev Biol. May 27, 2023; 500 22-30.
Insights regarding skin regeneration in non-amniote vertebrates: Skin regeneration without scar formation and potential step-up to a higher level of regeneration., Abe G, Hayashi T, Yoshida K, Yoshida T, Kudoh H, Sakamoto J, Konishi A, Kamei Y, Takeuchi T, Tamura K, Yokoyama H., Semin Cell Dev Biol. April 1, 2020; 100 109-121.
Skin regeneration of amphibians: A novel model for skin regeneration as adults., Yokoyama H, Kudo N, Todate M, Shimada Y, Suzuki M, Tamura K., Dev Growth Differ. August 1, 2018; 60 (6): 316-325.
Cells from subcutaneous tissues contribute to scarless skin regeneration in Xenopus laevis froglets., Otsuka-Yamaguchi R, Kawasumi-Kita A, Kudo N, Izutsu Y, Tamura K, Yokoyama H., Dev Dyn. August 1, 2017; 246 (8): 585-597.
Application of local gene induction by infrared laser-mediated microscope and temperature stimulator to amphibian regeneration study., Kawasumi-Kita A, Hayashi T, Kobayashi T, Nagayama C, Hayashi S, Kamei Y, Morishita Y, Takeuchi T, Tamura K, Yokoyama H., Dev Growth Differ. December 1, 2015; 57 (9): 601-13.
Epigenetic modification maintains intrinsic limb-cell identity in Xenopus limb bud regeneration., Hayashi S, Kawaguchi A, Uchiyama I, Kawasumi-Kita A, Kobayashi T, Nishide H, Tsutsumi R, Tsuru K, Inoue T, Ogino H, Agata K, Tamura K, Yokoyama H., Dev Biol. October 15, 2015; 406 (2): 271-82.
Evidence for an amphibian sixth digit., Hayashi S, Kobayashi T, Yano T, Kamiyama N, Egawa S, Seki R, Takizawa K, Okabe M, Yokoyama H, Tamura K., Zoological Lett. June 15, 2015; 1 17.
Roles of Hippo signaling pathway in size control of organ regeneration., Hayashi S, Yokoyama H, Tamura K., Dev Growth Differ. May 1, 2015; 57 (4): 341-51.
Transcriptional regulators in the Hippo signaling pathway control organ growth in Xenopus tadpole tail regeneration., Hayashi S, Ochi H, Ogino H, Kawasumi A, Kamei Y, Tamura K, Yokoyama H., Dev Biol. December 1, 2014; 396 (1): 31-41.
Yap1, transcription regulator in the Hippo signaling pathway, is required for Xenopus limb bud regeneration., Hayashi S, Tamura K, Yokoyama H., Dev Biol. April 1, 2014; 388 (1): 57-67.
Wound healing in mammals and amphibians: toward limb regeneration in mammals., Kawasumi A, Sagawa N, Hayashi S, Yokoyama H, Tamura K., Curr Top Microbiol Immunol. January 1, 2013; 367 33-49.
Prx-1 expression in Xenopus laevis scarless skin-wound healing and its resemblance to epimorphic regeneration., Yokoyama H, Maruoka T, Aruga A, Amano T, Ohgo S, Shiroishi T, Tamura K., J Invest Dermatol. December 1, 2011; 131 (12): 2477-85.
Different requirement for Wnt/β-catenin signaling in limb regeneration of larval and adult Xenopus., Yokoyama H, Maruoka T, Ochi H, Aruga A, Ohgo S, Ogino H, Tamura K., PLoS One. January 1, 2011; 6 (7): e21721.
Analysis of hoxa11 and hoxa13 expression during patternless limb regeneration in Xenopus., Ohgo S, Itoh A, Suzuki M, Satoh A, Yokoyama H, Tamura K., Dev Biol. February 15, 2010; 338 (2): 148-57.
Effects of activation of hedgehog signaling on patterning, growth, and differentiation in Xenopus froglet limb regeneration., Yakushiji N, Suzuki M, Satoh A, Ide H, Tamura K., Dev Dyn. August 1, 2009; 238 (8): 1887-96.
Repatterning in amphibian limb regeneration: A model for study of genetic and epigenetic control of organ regeneration., Yakushiji N, Yokoyama H, Tamura K., Semin Cell Dev Biol. July 1, 2009; 20 (5): 565-74.
Xenopus W-linked DM-W induces Foxl2 and Cyp19 expression during ovary formation., Okada E, Yoshimoto S, Ikeda N, Kanda H, Tamura K, Shiba T, Takamatsu N, Ito M., Sex Dev. January 1, 2009; 3 (1): 38-42.
Mitf contributes to melanosome distribution and melanophore dendricity., Kawasaki A, Kumasaka M, Satoh A, Suzuki M, Tamura K, Goto T, Asashima M, Yamamoto H., Pigment Cell Melanoma Res. February 1, 2008; 21 (1): 56-62.
Correlation between Shh expression and DNA methylation status of the limb-specific Shh enhancer region during limb regeneration in amphibians., Yakushiji N, Suzuki M, Satoh A, Sagai T, Shiroishi T, Kobayashi H, Sasaki H, Ide H, Tamura K., Dev Biol. December 1, 2007; 312 (1): 171-82.
Transgenic Xenopus with prx1 limb enhancer reveals crucial contribution of MEK/ERK and PI3K/AKT pathways in blastema formation during limb regeneration., Suzuki M, Satoh A, Ide H, Tamura K., Dev Biol. April 15, 2007; 304 (2): 675-86.
Characterization of Xenopus digits and regenerated limbs of the froglet., Satoh A, Endo T, Abe M, Yakushiji N, Ohgo S, Tamura K, Ide H., Dev Dyn. December 1, 2006; 235 (12): 3316-26.
Limb regeneration in Xenopus laevis froglet., Suzuki M, Yakushiji N, Nakada Y, Satoh A, Ide H, Tamura K., ScientificWorldJournal. May 12, 2006; 6 Suppl 1 26-37.
Analysis of scleraxis and dermo-1 genes in a regenerating limb of Xenopus laevis., Satoh A, Nakada Y, Suzuki M, Tamura K, Ide H., Dev Dyn. April 1, 2006; 235 (4): 1065-73.
Characteristics of initiation and early events for muscle development in the Xenopus limb bud., Satoh A, Sakamaki K, Ide H, Tamura K., Dev Dyn. December 1, 2005; 234 (4): 846-57.
Nerve-dependent and -independent events in blastema formation during Xenopus froglet limb regeneration., Suzuki M, Satoh A, Ide H, Tamura K., Dev Biol. October 1, 2005; 286 (1): 361-75.
Joint development in Xenopus laevis and induction of segmentations in regenerating froglet limb (spike)., Satoh A, Suzuki M, Amano T, Tamura K, Ide H., Dev Dyn. August 1, 2005; 233 (4): 1444-53.
Muscle formation in regenerating Xenopus froglet limb., Satoh A, Ide H, Tamura K., Dev Dyn. June 1, 2005; 233 (2): 337-46.
Anteroposterior axis formation in Xenopus limb bud recombinants: a model of pattern formation during limb regeneration., Yokoyama H, Tamura K, Ide H., Dev Dyn. November 1, 2002; 225 (3): 277-88.
FGF-10 stimulates limb regeneration ability in Xenopus laevis., Yokoyama H, Ide H, Tamura K., Dev Biol. May 1, 2001; 233 (1): 72-9.
An epidermal signal regulates Lmx-1 expression and dorsal-ventral pattern during Xenopus limb regeneration., Matsuda H, Yokoyama H, Endo T, Tamura K, Ide H., Dev Biol. January 15, 2001; 229 (2): 351-62.
Analysis of gene expressions during Xenopus forelimb regeneration., Endo T, Tamura K, Ide H., Dev Biol. April 15, 2000; 220 (2): 296-306.
Mesenchyme with fgf-10 expression is responsible for regenerative capacity in Xenopus limb buds., Yokoyama H, Yonei-Tamura S, Endo T, Izpisúa Belmonte JC, Tamura K, Ide H., Dev Biol. March 1, 2000; 219 (1): 18-29.
Molecular basis of left-right asymmetry., Tamura K, Yonei-Tamura S, Izpisúa Belmonte JC., Dev Growth Differ. December 1, 1999; 41 (6): 645-56.
Spatially and temporally-restricted expression of two T-box genes during zebrafish embryogenesis., Yonei-Tamura S, Tamura K, Tsukui T, Izpisúa Belmonte JC., Mech Dev. February 1, 1999; 80 (2): 219-21.
The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development., Takahashi M, Tamura K, Büscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T, Izpisúa Belmonte JC., Development. November 1, 1998; 125 (22): 4417-25.
Pitx2 determines left-right asymmetry of internal organs in vertebrates., Ryan AK, Blumberg B, Rodriguez-Esteban C, Yonei-Tamura S, Tamura K, Tsukui T, de la Peña J, Sabbagh W, Greenwald J, Choe S, Norris DP, Robertson EJ, Evans RM, Rosenfeld MG, Izpisúa Belmonte JC., Nature. August 6, 1998; 394 (6693): 545-51.
Multiple digit formation in Xenopus limb bud recombinants., Yokoyama H, Endo T, Tamura K, Yajima H, Ide H., Dev Biol. April 1, 1998; 196 (1): 1-10.
Pattern formation in dissociated limb bud mesenchyme in vitro and in vivo., Ide H, Yokoyama H, Endo T, Omi M, Tamura K, Wada N., Wound Repair Regen. January 1, 1998; 6 (4): 398-402.
Shh expression in developing and regenerating limb buds of Xenopus laevis., Endo T, Yokoyama H, Tamura K, Ide H., Dev Dyn. June 1, 1997; 209 (2): 227-32.

hoxc12/c13 as key regulators for rebooting the developmental program in Xenopus limb regeneration., Kawasumi-Kita A, Lee SW, Ohtsuka D, Niimi K, Asakura Y, Kitajima K, Sakane Y, Tamura K, Ochi H, Suzuki KT, Morishita Y., Nat Commun. April 22, 2024; 15 (1): 3340.

An archetype and scaling of developmental tissue dynamics across species., Morishita Y, Lee SW, Suzuki T, Yokoyama H, Kamei Y, Tamura K, Kawasumi-Kita A., Nat Commun. December 11, 2023; 14 (1): 8199.

The shh limb enhancer is activated in patterned limb regeneration but not in hypomorphic limb regeneration in Xenopus laevis., Tada R, Higashidate T, Amano T, Ishikawa S, Yokoyama C, Kobari S, Nara S, Ishida K, Kawaguchi A, Ochi H, Ogino H, Yakushiji-Kaminatsui N, Sakamoto J, Kamei Y, Tamura K, Yokoyama H., Dev Biol. May 27, 2023; 500 22-30.

Insights regarding skin regeneration in non-amniote vertebrates: Skin regeneration without scar formation and potential step-up to a higher level of regeneration., Abe G, Hayashi T, Yoshida K, Yoshida T, Kudoh H, Sakamoto J, Konishi A, Kamei Y, Takeuchi T, Tamura K, Yokoyama H., Semin Cell Dev Biol. April 1, 2020; 100 109-121.

Skin regeneration of amphibians: A novel model for skin regeneration as adults., Yokoyama H, Kudo N, Todate M, Shimada Y, Suzuki M, Tamura K., Dev Growth Differ. August 1, 2018; 60 (6): 316-325.

Cells from subcutaneous tissues contribute to scarless skin regeneration in Xenopus laevis froglets., Otsuka-Yamaguchi R, Kawasumi-Kita A, Kudo N, Izutsu Y, Tamura K, Yokoyama H., Dev Dyn. August 1, 2017; 246 (8): 585-597.

Application of local gene induction by infrared laser-mediated microscope and temperature stimulator to amphibian regeneration study., Kawasumi-Kita A, Hayashi T, Kobayashi T, Nagayama C, Hayashi S, Kamei Y, Morishita Y, Takeuchi T, Tamura K, Yokoyama H., Dev Growth Differ. December 1, 2015; 57 (9): 601-13.

Epigenetic modification maintains intrinsic limb-cell identity in Xenopus limb bud regeneration., Hayashi S, Kawaguchi A, Uchiyama I, Kawasumi-Kita A, Kobayashi T, Nishide H, Tsutsumi R, Tsuru K, Inoue T, Ogino H, Agata K, Tamura K, Yokoyama H., Dev Biol. October 15, 2015; 406 (2): 271-82.

Evidence for an amphibian sixth digit., Hayashi S, Kobayashi T, Yano T, Kamiyama N, Egawa S, Seki R, Takizawa K, Okabe M, Yokoyama H, Tamura K., Zoological Lett. June 15, 2015; 1 17.

Roles of Hippo signaling pathway in size control of organ regeneration., Hayashi S, Yokoyama H, Tamura K., Dev Growth Differ. May 1, 2015; 57 (4): 341-51.

Transcriptional regulators in the Hippo signaling pathway control organ growth in Xenopus tadpole tail regeneration., Hayashi S, Ochi H, Ogino H, Kawasumi A, Kamei Y, Tamura K, Yokoyama H., Dev Biol. December 1, 2014; 396 (1): 31-41.

Yap1, transcription regulator in the Hippo signaling pathway, is required for Xenopus limb bud regeneration., Hayashi S, Tamura K, Yokoyama H., Dev Biol. April 1, 2014; 388 (1): 57-67.

Wound healing in mammals and amphibians: toward limb regeneration in mammals., Kawasumi A, Sagawa N, Hayashi S, Yokoyama H, Tamura K., Curr Top Microbiol Immunol. January 1, 2013; 367 33-49.

Prx-1 expression in Xenopus laevis scarless skin-wound healing and its resemblance to epimorphic regeneration., Yokoyama H, Maruoka T, Aruga A, Amano T, Ohgo S, Shiroishi T, Tamura K., J Invest Dermatol. December 1, 2011; 131 (12): 2477-85.

Different requirement for Wnt/β-catenin signaling in limb regeneration of larval and adult Xenopus., Yokoyama H, Maruoka T, Ochi H, Aruga A, Ohgo S, Ogino H, Tamura K., PLoS One. January 1, 2011; 6 (7): e21721.

Analysis of hoxa11 and hoxa13 expression during patternless limb regeneration in Xenopus., Ohgo S, Itoh A, Suzuki M, Satoh A, Yokoyama H, Tamura K., Dev Biol. February 15, 2010; 338 (2): 148-57.

Effects of activation of hedgehog signaling on patterning, growth, and differentiation in Xenopus froglet limb regeneration., Yakushiji N, Suzuki M, Satoh A, Ide H, Tamura K., Dev Dyn. August 1, 2009; 238 (8): 1887-96.

Repatterning in amphibian limb regeneration: A model for study of genetic and epigenetic control of organ regeneration., Yakushiji N, Yokoyama H, Tamura K., Semin Cell Dev Biol. July 1, 2009; 20 (5): 565-74.

Xenopus W-linked DM-W induces Foxl2 and Cyp19 expression during ovary formation., Okada E, Yoshimoto S, Ikeda N, Kanda H, Tamura K, Shiba T, Takamatsu N, Ito M., Sex Dev. January 1, 2009; 3 (1): 38-42.

Mitf contributes to melanosome distribution and melanophore dendricity., Kawasaki A, Kumasaka M, Satoh A, Suzuki M, Tamura K, Goto T, Asashima M, Yamamoto H., Pigment Cell Melanoma Res. February 1, 2008; 21 (1): 56-62.

Correlation between Shh expression and DNA methylation status of the limb-specific Shh enhancer region during limb regeneration in amphibians., Yakushiji N, Suzuki M, Satoh A, Sagai T, Shiroishi T, Kobayashi H, Sasaki H, Ide H, Tamura K., Dev Biol. December 1, 2007; 312 (1): 171-82.

Transgenic Xenopus with prx1 limb enhancer reveals crucial contribution of MEK/ERK and PI3K/AKT pathways in blastema formation during limb regeneration., Suzuki M, Satoh A, Ide H, Tamura K., Dev Biol. April 15, 2007; 304 (2): 675-86.

Characterization of Xenopus digits and regenerated limbs of the froglet., Satoh A, Endo T, Abe M, Yakushiji N, Ohgo S, Tamura K, Ide H., Dev Dyn. December 1, 2006; 235 (12): 3316-26.

Limb regeneration in Xenopus laevis froglet., Suzuki M, Yakushiji N, Nakada Y, Satoh A, Ide H, Tamura K., ScientificWorldJournal. May 12, 2006; 6 Suppl 1 26-37.

Analysis of scleraxis and dermo-1 genes in a regenerating limb of Xenopus laevis., Satoh A, Nakada Y, Suzuki M, Tamura K, Ide H., Dev Dyn. April 1, 2006; 235 (4): 1065-73.

Characteristics of initiation and early events for muscle development in the Xenopus limb bud., Satoh A, Sakamaki K, Ide H, Tamura K., Dev Dyn. December 1, 2005; 234 (4): 846-57.

Nerve-dependent and -independent events in blastema formation during Xenopus froglet limb regeneration., Suzuki M, Satoh A, Ide H, Tamura K., Dev Biol. October 1, 2005; 286 (1): 361-75.

Joint development in Xenopus laevis and induction of segmentations in regenerating froglet limb (spike)., Satoh A, Suzuki M, Amano T, Tamura K, Ide H., Dev Dyn. August 1, 2005; 233 (4): 1444-53.

Muscle formation in regenerating Xenopus froglet limb., Satoh A, Ide H, Tamura K., Dev Dyn. June 1, 2005; 233 (2): 337-46.

Anteroposterior axis formation in Xenopus limb bud recombinants: a model of pattern formation during limb regeneration., Yokoyama H, Tamura K, Ide H., Dev Dyn. November 1, 2002; 225 (3): 277-88.

FGF-10 stimulates limb regeneration ability in Xenopus laevis., Yokoyama H, Ide H, Tamura K., Dev Biol. May 1, 2001; 233 (1): 72-9.

An epidermal signal regulates Lmx-1 expression and dorsal-ventral pattern during Xenopus limb regeneration., Matsuda H, Yokoyama H, Endo T, Tamura K, Ide H., Dev Biol. January 15, 2001; 229 (2): 351-62.

Analysis of gene expressions during Xenopus forelimb regeneration., Endo T, Tamura K, Ide H., Dev Biol. April 15, 2000; 220 (2): 296-306.

Mesenchyme with fgf-10 expression is responsible for regenerative capacity in Xenopus limb buds., Yokoyama H, Yonei-Tamura S, Endo T, Izpisúa Belmonte JC, Tamura K, Ide H., Dev Biol. March 1, 2000; 219 (1): 18-29.

Molecular basis of left-right asymmetry., Tamura K, Yonei-Tamura S, Izpisúa Belmonte JC., Dev Growth Differ. December 1, 1999; 41 (6): 645-56.

Spatially and temporally-restricted expression of two T-box genes during zebrafish embryogenesis., Yonei-Tamura S, Tamura K, Tsukui T, Izpisúa Belmonte JC., Mech Dev. February 1, 1999; 80 (2): 219-21.

The role of Alx-4 in the establishment of anteroposterior polarity during vertebrate limb development., Takahashi M, Tamura K, Büscher D, Masuya H, Yonei-Tamura S, Matsumoto K, Naitoh-Matsuo M, Takeuchi J, Ogura K, Shiroishi T, Ogura T, Izpisúa Belmonte JC., Development. November 1, 1998; 125 (22): 4417-25.

Pitx2 determines left-right asymmetry of internal organs in vertebrates., Ryan AK, Blumberg B, Rodriguez-Esteban C, Yonei-Tamura S, Tamura K, Tsukui T, de la Peña J, Sabbagh W, Greenwald J, Choe S, Norris DP, Robertson EJ, Evans RM, Rosenfeld MG, Izpisúa Belmonte JC., Nature. August 6, 1998; 394 (6693): 545-51.

Multiple digit formation in Xenopus limb bud recombinants., Yokoyama H, Endo T, Tamura K, Yajima H, Ide H., Dev Biol. April 1, 1998; 196 (1): 1-10.

Pattern formation in dissociated limb bud mesenchyme in vitro and in vivo., Ide H, Yokoyama H, Endo T, Omi M, Tamura K, Wada N., Wound Repair Regen. January 1, 1998; 6 (4): 398-402.

Shh expression in developing and regenerating limb buds of Xenopus laevis., Endo T, Yokoyama H, Tamura K, Ide H., Dev Dyn. June 1, 1997; 209 (2): 227-32.

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