Alan P. Wolffe - Publications

Publications (136)

XB-PERS-2685

Publications By Alan P. Wolffe

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Precipitous release of methyl-CpG binding protein 2 and histone deacetylase 1 from the methylated human multidrug resistance gene (MDR1) on activation., El-Osta A, Kantharidis P, Zalcberg JR, Wolffe AP., Mol Cell Biol. March 1, 2002; 22 (6): 1844-57.
Purification of MeCP2-containing deacetylase from Xenopus laevis., Jones PL, Wade PA, Wolffe AP., Methods Mol Biol. January 1, 2002; 200 131-41.
Gene-selective developmental roles of general transcription factors., Veenstra GJ, Wolffe AP., Trends Biochem Sci. November 1, 2001; 26 (11): 665-71.
Constitutive genomic methylation during embryonic development of Xenopus., Veenstra GJ, Wolffe AP., Biochim Biophys Acta. October 31, 2001; 1521 (1-3): 39-44.
Chromatin remodeling by the thyroid hormone receptor in regulation of the thyroid-stimulating hormone alpha-subunit promoter., Collingwood TN, Urnov FD, Chatterjee VK, Wolffe AP., J Biol Chem. September 7, 2001; 276 (36): 34227-34.
Programming the transcriptional state of replicating methylated dna., Stunkel W, Ait-Si-Ali S, Jones PL, Wolffe AP., J Biol Chem. June 8, 2001; 276 (23): 20743-9.
An array of positioned nucleosomes potentiates thyroid hormone receptor action in vivo., Urnov FD, Wolffe AP., J Biol Chem. June 8, 2001; 276 (23): 19753-61.
Purification of the MeCP2/histone deacetylase complex from Xenopus laevis., Jones PL, Wade PA, Wolffe AP., Methods Mol Biol. January 1, 2001; 181 297-307.
Distinct roles for TBP and TBP-like factor in early embryonic gene transcription in Xenopus., Veenstra GJ, Weeks DL, Wolffe AP., Science. December 22, 2000; 290 (5500): 2312-5.
Multiple ISWI ATPase complexes from xenopus laevis. Functional conservation of an ACF/CHRAC homolog., Guschin D, Geiman TM, Kikyo N, Tremethick DJ, Wolffe AP, Wade PA., J Biol Chem. November 10, 2000; 275 (45): 35248-55.
Functional consequences of Rett syndrome mutations on human MeCP2., Yusufzai TM, Wolffe AP., Nucleic Acids Res. November 1, 2000; 28 (21): 4172-9.
Active remodeling of somatic nuclei in egg cytoplasm by the nucleosomal ATPase ISWI., Kikyo N, Wade PA, Guschin D, Ge H, Wolffe AP., Science. September 29, 2000; 289 (5488): 2360-2.
Determinants of vitellogenin B1 promoter architecture. HNF3 and estrogen responsive transcription within chromatin., Robyr D, Gegonne A, Wolffe AP, Wahli W., J Biol Chem. September 8, 2000; 275 (36): 28291-300.
Targeting of N-CoR and histone deacetylase 3 by the oncoprotein v-erbA yields a chromatin infrastructure-dependent transcriptional repression pathway., Urnov FD, Yee J, Sachs L, Collingwood TN, Bauer A, Beug H, Shi YB, Wolffe AP., EMBO J. August 1, 2000; 19 (15): 4074-90.
ATP-Dependent histone octamer mobilization and histone deacetylation mediated by the Mi-2 chromatin remodeling complex., Guschin D, Wade PA, Kikyo N, Wolffe AP., Biochemistry. May 9, 2000; 39 (18): 5238-45.
Histone deacetylase activity is required for the induction of the MyoD muscle cell lineage in Xenopus., Steinbac OC, Wolffe AP, Rupp RA., Biol Chem. January 1, 2000; 381 (9-10): 1013-6.
Translation of maternal TATA-binding protein mRNA potentiates basal but not activated transcription in Xenopus embryos at the midblastula transition., Veenstra GJ, Destrée OH, Wolffe AP., Mol Cell Biol. December 1, 1999; 19 (12): 7972-82.
p300 stimulates transcription instigated by ligand-bound thyroid hormone receptor at a step subsequent to chromatin disruption., Li Q, Imhof A, Collingwood TN, Urnov FD, Wolffe AP., EMBO J. October 15, 1999; 18 (20): 5634-52.
Purification and properties of the Xenopus Hat1 acetyltransferase: association with the 14-3-3 proteins in the oocyte nucleus., Imhof A, Wolffe AP., Biochemistry. October 5, 1999; 38 (40): 13085-93.
Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation., Wade PA, Gegonne A, Jones PL, Ballestar E, Aubry F, Wolffe AP., Nat Genet. September 1, 1999; 23 (1): 62-6.
Functional analysis of the SIN3-histone deacetylase RPD3-RbAp48-histone H4 connection in the Xenopus oocyte., Vermaak D, Wade PA, Jones PL, Shi YB, Wolffe AP., Mol Cell Biol. September 1, 1999; 19 (9): 5847-60.
The methyl-CpG binding transcriptional repressor MeCP2 stably associates with nucleosomal DNA., Chandler SP, Guschin D, Landsberger N, Wolffe AP., Biochemistry. June 1, 1999; 38 (22): 7008-18.
Transcriptional repression by XPc1, a new Polycomb homolog in Xenopus laevis embryos, is independent of histone deacetylase., Strouboulis J, Damjanovski S, Vermaak D, Meric F, Wolffe AP., Mol Cell Biol. June 1, 1999; 19 (6): 3958-68.
Purification of a histone deacetylase complex from Xenopus laevis: preparation of substrates and assay procedures., Wade PA, Jones PL, Vermaak D, Wolffe AP., Methods Enzymol. January 1, 1999; 304 715-25.
Xenopus NF-Y pre-sets chromatin to potentiate p300 and acetylation-responsive transcription from the Xenopus hsp70 promoter in vivo., Li Q, Herrler M, Landsberger N, Kaludov N, Ogryzko VV, Nakatani Y, Wolffe AP., EMBO J. November 2, 1998; 17 (21): 6300-15.
Gene regulation by Y-box proteins: coupling control of transcription and translation., Matsumoto K, Wolffe AP., Trends Cell Biol. August 1, 1998; 8 (8): 318-23.
Disruption of higher-order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III., Tse C, Sera T, Wolffe AP, Hansen JC., Mol Cell Biol. August 1, 1998; 18 (8): 4629-38.
A multiple subunit Mi-2 histone deacetylase from Xenopus laevis cofractionates with an associated Snf2 superfamily ATPase., Wade PA, Jones PL, Vermaak D, Wolffe AP., Curr Biol. July 2, 1998; 8 (14): 843-6.
Role of histone H1 as an architectural determinant of chromatin structure and as a specific repressor of transcription on Xenopus oocyte 5S rRNA genes., Sera T, Wolffe AP., Mol Cell Biol. July 1, 1998; 18 (7): 3668-80.
Asymmetric linker histone association directs the asymmetric rearrangement of core histone interactions in a positioned nucleosome containing a thyroid hormone response element., Guschin D, Chandler S, Wolffe AP., Biochemistry. June 16, 1998; 37 (24): 8629-36.
Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription., Jones PL, Veenstra GJ, Wade PA, Vermaak D, Kass SU, Landsberger N, Strouboulis J, Wolffe AP., Nat Genet. June 1, 1998; 19 (2): 187-91.
The globular domain of histone H1 is sufficient to direct specific gene repression in early Xenopus embryos., Vermaak D, Steinbach OC, Dimitrov S, Rupp RA, Wolffe AP., Curr Biol. April 23, 1998; 8 (9): 533-6.
Nuclear history of a pre-mRNA determines the translational activity of cytoplasmic mRNA., Matsumoto K, Wassarman KM, Wolffe AP., EMBO J. April 1, 1998; 17 (7): 2107-21.
Retinoid receptor-induced alteration of the chromatin assembled on a ligand-responsive promoter in Xenopus oocytes., Minucci S, Wong J, Blanco JC, Shi YB, Wolffe AP, Ozato K., Mol Endocrinol. March 1, 1998; 12 (3): 315-24.
Distinct requirements for chromatin assembly in transcriptional repression by thyroid hormone receptor and histone deacetylase., Wong J, Patterton D, Imhof A, Guschin D, Shi YB, Wolffe AP., EMBO J. January 15, 1998; 17 (2): 520-34.
Histone H1., Wolffe AP., Int J Biochem Cell Biol. December 1, 1997; 29 (12): 1463-6.
Structural and functional features of a specific nucleosome containing a recognition element for the thyroid hormone receptor., Wong J, Li Q, Levi BZ, Shi YB, Wolffe AP., EMBO J. December 1, 1997; 16 (23): 7130-45.
Sin mutations of histone H3: influence on nucleosome core structure and function., Kurumizaka H, Wolffe AP., Mol Cell Biol. December 1, 1997; 17 (12): 6953-69.
Somatic linker histones cause loss of mesodermal competence in Xenopus., Steinbach OC, Wolffe AP, Rupp RA., Nature. September 25, 1997; 389 (6649): 395-9.
Remodeling of regulatory nucleoprotein complexes on the Xenopus hsp70 promoter during meiotic maturation of the Xenopus oocyte., Landsberger N, Wolffe AP., EMBO J. July 16, 1997; 16 (14): 4361-73.
Determinants of chromatin disruption and transcriptional regulation instigated by the thyroid hormone receptor: hormone-regulated chromatin disruption is not sufficient for transcriptional activation., Wong J, Shi YB, Wolffe AP., EMBO J. June 2, 1997; 16 (11): 3158-71.
Regulated unmasking of in vivo synthesized maternal mRNA at oocyte maturation. A role for the chaperone nucleoplasmin., Meric F, Matsumoto K, Wolffe AP., J Biol Chem. May 9, 1997; 272 (19): 12840-6.
Three steps in the regulation of transcription by the thyroid hormone receptor: establishment of a repressive chromatin structure, disruption of chromatin and transcriptional activation., Wolffe AP, Wong J, Li Q, Levi BZ, Shi YB., Biochem Soc Trans. May 1, 1997; 25 (2): 612-5.
Fine resolution of histones by two-dimensional polyacrylamide gel electrophoresis: developmental implications., Dimitrov SI, Wolffe AP., Methods. May 1, 1997; 12 (1): 57-61.
Transcription of dinucleosomal templates., Wolffe AP, Ura K., Methods. May 1, 1997; 12 (1): 10-9.
Histone acetylation: influence on transcription, nucleosome mobility and positioning, and linker histone-dependent transcriptional repression., Ura K, Kurumizaka H, Dimitrov S, Almouzni G, Wolffe AP., EMBO J. April 15, 1997; 16 (8): 2096-107.
DNA methylation directs a time-dependent repression of transcription initiation., Kass SU, Landsberger N, Wolffe AP., Curr Biol. March 1, 1997; 7 (3): 157-65.
Masking and unmasking maternal mRNA. The role of polyadenylation, transcription, splicing, and nuclear history., Meric F, Searfoss AM, Wormington M, Wolffe AP., J Biol Chem. November 29, 1996; 271 (48): 30804-10.
Functional domains for assembly of histones H3 and H4 into the chromatin of Xenopus embryos., Freeman L, Kurumizaka H, Wolffe AP., Proc Natl Acad Sci U S A. November 12, 1996; 93 (23): 12780-5.
Remodeling somatic nuclei in Xenopus laevis egg extracts: molecular mechanisms for the selective release of histones H1 and H1(0) from chromatin and the acquisition of transcriptional competence., Dimitrov S, Wolffe AP., EMBO J. November 1, 1996; 15 (21): 5897-906.

Precipitous release of methyl-CpG binding protein 2 and histone deacetylase 1 from the methylated human multidrug resistance gene (MDR1) on activation., El-Osta A, Kantharidis P, Zalcberg JR, Wolffe AP., Mol Cell Biol. March 1, 2002; 22 (6): 1844-57.

Purification of MeCP2-containing deacetylase from Xenopus laevis., Jones PL, Wade PA, Wolffe AP., Methods Mol Biol. January 1, 2002; 200 131-41.

Gene-selective developmental roles of general transcription factors., Veenstra GJ, Wolffe AP., Trends Biochem Sci. November 1, 2001; 26 (11): 665-71.

Constitutive genomic methylation during embryonic development of Xenopus., Veenstra GJ, Wolffe AP., Biochim Biophys Acta. October 31, 2001; 1521 (1-3): 39-44.

Chromatin remodeling by the thyroid hormone receptor in regulation of the thyroid-stimulating hormone alpha-subunit promoter., Collingwood TN, Urnov FD, Chatterjee VK, Wolffe AP., J Biol Chem. September 7, 2001; 276 (36): 34227-34.

Programming the transcriptional state of replicating methylated dna., Stunkel W, Ait-Si-Ali S, Jones PL, Wolffe AP., J Biol Chem. June 8, 2001; 276 (23): 20743-9.

An array of positioned nucleosomes potentiates thyroid hormone receptor action in vivo., Urnov FD, Wolffe AP., J Biol Chem. June 8, 2001; 276 (23): 19753-61.

Purification of the MeCP2/histone deacetylase complex from Xenopus laevis., Jones PL, Wade PA, Wolffe AP., Methods Mol Biol. January 1, 2001; 181 297-307.

Distinct roles for TBP and TBP-like factor in early embryonic gene transcription in Xenopus., Veenstra GJ, Weeks DL, Wolffe AP., Science. December 22, 2000; 290 (5500): 2312-5.

Multiple ISWI ATPase complexes from xenopus laevis. Functional conservation of an ACF/CHRAC homolog., Guschin D, Geiman TM, Kikyo N, Tremethick DJ, Wolffe AP, Wade PA., J Biol Chem. November 10, 2000; 275 (45): 35248-55.

Functional consequences of Rett syndrome mutations on human MeCP2., Yusufzai TM, Wolffe AP., Nucleic Acids Res. November 1, 2000; 28 (21): 4172-9.

Active remodeling of somatic nuclei in egg cytoplasm by the nucleosomal ATPase ISWI., Kikyo N, Wade PA, Guschin D, Ge H, Wolffe AP., Science. September 29, 2000; 289 (5488): 2360-2.

Determinants of vitellogenin B1 promoter architecture. HNF3 and estrogen responsive transcription within chromatin., Robyr D, Gegonne A, Wolffe AP, Wahli W., J Biol Chem. September 8, 2000; 275 (36): 28291-300.

Targeting of N-CoR and histone deacetylase 3 by the oncoprotein v-erbA yields a chromatin infrastructure-dependent transcriptional repression pathway., Urnov FD, Yee J, Sachs L, Collingwood TN, Bauer A, Beug H, Shi YB, Wolffe AP., EMBO J. August 1, 2000; 19 (15): 4074-90.

ATP-Dependent histone octamer mobilization and histone deacetylation mediated by the Mi-2 chromatin remodeling complex., Guschin D, Wade PA, Kikyo N, Wolffe AP., Biochemistry. May 9, 2000; 39 (18): 5238-45.

Histone deacetylase activity is required for the induction of the MyoD muscle cell lineage in Xenopus., Steinbac OC, Wolffe AP, Rupp RA., Biol Chem. January 1, 2000; 381 (9-10): 1013-6.

Translation of maternal TATA-binding protein mRNA potentiates basal but not activated transcription in Xenopus embryos at the midblastula transition., Veenstra GJ, Destrée OH, Wolffe AP., Mol Cell Biol. December 1, 1999; 19 (12): 7972-82.

p300 stimulates transcription instigated by ligand-bound thyroid hormone receptor at a step subsequent to chromatin disruption., Li Q, Imhof A, Collingwood TN, Urnov FD, Wolffe AP., EMBO J. October 15, 1999; 18 (20): 5634-52.

Purification and properties of the Xenopus Hat1 acetyltransferase: association with the 14-3-3 proteins in the oocyte nucleus., Imhof A, Wolffe AP., Biochemistry. October 5, 1999; 38 (40): 13085-93.

Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation., Wade PA, Gegonne A, Jones PL, Ballestar E, Aubry F, Wolffe AP., Nat Genet. September 1, 1999; 23 (1): 62-6.

Functional analysis of the SIN3-histone deacetylase RPD3-RbAp48-histone H4 connection in the Xenopus oocyte., Vermaak D, Wade PA, Jones PL, Shi YB, Wolffe AP., Mol Cell Biol. September 1, 1999; 19 (9): 5847-60.

The methyl-CpG binding transcriptional repressor MeCP2 stably associates with nucleosomal DNA., Chandler SP, Guschin D, Landsberger N, Wolffe AP., Biochemistry. June 1, 1999; 38 (22): 7008-18.

Transcriptional repression by XPc1, a new Polycomb homolog in Xenopus laevis embryos, is independent of histone deacetylase., Strouboulis J, Damjanovski S, Vermaak D, Meric F, Wolffe AP., Mol Cell Biol. June 1, 1999; 19 (6): 3958-68.

Purification of a histone deacetylase complex from Xenopus laevis: preparation of substrates and assay procedures., Wade PA, Jones PL, Vermaak D, Wolffe AP., Methods Enzymol. January 1, 1999; 304 715-25.

Xenopus NF-Y pre-sets chromatin to potentiate p300 and acetylation-responsive transcription from the Xenopus hsp70 promoter in vivo., Li Q, Herrler M, Landsberger N, Kaludov N, Ogryzko VV, Nakatani Y, Wolffe AP., EMBO J. November 2, 1998; 17 (21): 6300-15.

Gene regulation by Y-box proteins: coupling control of transcription and translation., Matsumoto K, Wolffe AP., Trends Cell Biol. August 1, 1998; 8 (8): 318-23.

Disruption of higher-order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III., Tse C, Sera T, Wolffe AP, Hansen JC., Mol Cell Biol. August 1, 1998; 18 (8): 4629-38.

A multiple subunit Mi-2 histone deacetylase from Xenopus laevis cofractionates with an associated Snf2 superfamily ATPase., Wade PA, Jones PL, Vermaak D, Wolffe AP., Curr Biol. July 2, 1998; 8 (14): 843-6.

Role of histone H1 as an architectural determinant of chromatin structure and as a specific repressor of transcription on Xenopus oocyte 5S rRNA genes., Sera T, Wolffe AP., Mol Cell Biol. July 1, 1998; 18 (7): 3668-80.

Asymmetric linker histone association directs the asymmetric rearrangement of core histone interactions in a positioned nucleosome containing a thyroid hormone response element., Guschin D, Chandler S, Wolffe AP., Biochemistry. June 16, 1998; 37 (24): 8629-36.

Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription., Jones PL, Veenstra GJ, Wade PA, Vermaak D, Kass SU, Landsberger N, Strouboulis J, Wolffe AP., Nat Genet. June 1, 1998; 19 (2): 187-91.

The globular domain of histone H1 is sufficient to direct specific gene repression in early Xenopus embryos., Vermaak D, Steinbach OC, Dimitrov S, Rupp RA, Wolffe AP., Curr Biol. April 23, 1998; 8 (9): 533-6.

Nuclear history of a pre-mRNA determines the translational activity of cytoplasmic mRNA., Matsumoto K, Wassarman KM, Wolffe AP., EMBO J. April 1, 1998; 17 (7): 2107-21.

Retinoid receptor-induced alteration of the chromatin assembled on a ligand-responsive promoter in Xenopus oocytes., Minucci S, Wong J, Blanco JC, Shi YB, Wolffe AP, Ozato K., Mol Endocrinol. March 1, 1998; 12 (3): 315-24.

Distinct requirements for chromatin assembly in transcriptional repression by thyroid hormone receptor and histone deacetylase., Wong J, Patterton D, Imhof A, Guschin D, Shi YB, Wolffe AP., EMBO J. January 15, 1998; 17 (2): 520-34.

Histone H1., Wolffe AP., Int J Biochem Cell Biol. December 1, 1997; 29 (12): 1463-6.

Structural and functional features of a specific nucleosome containing a recognition element for the thyroid hormone receptor., Wong J, Li Q, Levi BZ, Shi YB, Wolffe AP., EMBO J. December 1, 1997; 16 (23): 7130-45.

Sin mutations of histone H3: influence on nucleosome core structure and function., Kurumizaka H, Wolffe AP., Mol Cell Biol. December 1, 1997; 17 (12): 6953-69.

Somatic linker histones cause loss of mesodermal competence in Xenopus., Steinbach OC, Wolffe AP, Rupp RA., Nature. September 25, 1997; 389 (6649): 395-9.

Remodeling of regulatory nucleoprotein complexes on the Xenopus hsp70 promoter during meiotic maturation of the Xenopus oocyte., Landsberger N, Wolffe AP., EMBO J. July 16, 1997; 16 (14): 4361-73.

Determinants of chromatin disruption and transcriptional regulation instigated by the thyroid hormone receptor: hormone-regulated chromatin disruption is not sufficient for transcriptional activation., Wong J, Shi YB, Wolffe AP., EMBO J. June 2, 1997; 16 (11): 3158-71.

Regulated unmasking of in vivo synthesized maternal mRNA at oocyte maturation. A role for the chaperone nucleoplasmin., Meric F, Matsumoto K, Wolffe AP., J Biol Chem. May 9, 1997; 272 (19): 12840-6.

Three steps in the regulation of transcription by the thyroid hormone receptor: establishment of a repressive chromatin structure, disruption of chromatin and transcriptional activation., Wolffe AP, Wong J, Li Q, Levi BZ, Shi YB., Biochem Soc Trans. May 1, 1997; 25 (2): 612-5.

Fine resolution of histones by two-dimensional polyacrylamide gel electrophoresis: developmental implications., Dimitrov SI, Wolffe AP., Methods. May 1, 1997; 12 (1): 57-61.

Transcription of dinucleosomal templates., Wolffe AP, Ura K., Methods. May 1, 1997; 12 (1): 10-9.

Histone acetylation: influence on transcription, nucleosome mobility and positioning, and linker histone-dependent transcriptional repression., Ura K, Kurumizaka H, Dimitrov S, Almouzni G, Wolffe AP., EMBO J. April 15, 1997; 16 (8): 2096-107.

DNA methylation directs a time-dependent repression of transcription initiation., Kass SU, Landsberger N, Wolffe AP., Curr Biol. March 1, 1997; 7 (3): 157-65.

Masking and unmasking maternal mRNA. The role of polyadenylation, transcription, splicing, and nuclear history., Meric F, Searfoss AM, Wormington M, Wolffe AP., J Biol Chem. November 29, 1996; 271 (48): 30804-10.

Functional domains for assembly of histones H3 and H4 into the chromatin of Xenopus embryos., Freeman L, Kurumizaka H, Wolffe AP., Proc Natl Acad Sci U S A. November 12, 1996; 93 (23): 12780-5.

Remodeling somatic nuclei in Xenopus laevis egg extracts: molecular mechanisms for the selective release of histones H1 and H1(0) from chromatin and the acquisition of transcriptional competence., Dimitrov S, Wolffe AP., EMBO J. November 1, 1996; 15 (21): 5897-906.

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