Yoshikazu Haramoto - Publications

Publications (29)

XB-PERS-2938

Publications By Yoshikazu Haramoto

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Zbtb11 interacts with Otx2 and patterns the anterior neuroectoderm in Xenopus., Satou-Kobayashi Y, Takahashi S, Haramoto Y, Asashima M, Taira M., PLoS One. January 1, 2024; 19 (7): e0293852.
Identification of Novel Proteins in Foam Nests of the Japanese Forest Green Tree Frog, Rhacophorus arboreus., Shigeri Y, Nakata M, Kubota HY, Tomari N, Yamamoto Y, Uegaki K, Haramoto Y, Bumb C, Tanaka Y, Kinumi T, Inagaki H., Zoolog Sci. February 1, 2021; 38 (1): 8-19.
De novo transcription of multiple Hox cluster genes takes place simultaneously in early Xenopus tropicalis embryos., Kondo M, Matsuo M, Igarashi K, Haramoto Y, Yamamoto T, Yasuoka Y, Taira M., Biol Open. March 4, 2019; 8 (3):
Chromosome alignment maintenance requires the MAP RECQL4, mutated in the Rothmund-Thomson syndrome., Yokoyama H, Moreno-Andres D, Astrinidis SA, Hao Y, Weberruss M, Schellhaus AK, Lue H, Haramoto Y, Gruss OJ, Antonin W., Life Sci Alliance. February 4, 2019; 2 (1):
Identification and comparative analyses of Siamois cluster genes in Xenopus laevis and tropicalis., Haramoto Y, Saijyo T, Tanaka T, Furuno N, Suzuki A, Ito Y, Kondo M, Taira M, Takahashi S., Dev Biol. June 15, 2017; 426 (2): 374-383.
Genome evolution in the allotetraploid frog Xenopus laevis., Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS., Nature. October 20, 2016; 538 (7625): 336-343.
Complete mitochondrial genome of "Xenopus tropicalis" Asashima line (Anura: Pipidae), a possible undescribed species., Haramoto Y, Oshima T, Takahashi S, Asashima M, Ito Y, Kurabayashi A., Mitochondrial DNA A DNA Mapp Seq Anal. September 1, 2016; 27 (5): 3341-3.
Physicochemical and biological characterizations of Pxt peptides from amphibian (Xenopus tropicalis) skin., Shigeri Y, Horie M, Yoshida T, Hagihara Y, Imura T, Inagaki H, Haramoto Y, Ito Y, Asashima M., J Biochem. June 1, 2016; 159 (6): 619-29.
Insulin-like factor regulates neural induction through an IGF1 receptor-independent mechanism., Haramoto Y, Takahashi S, Oshima T, Onuma Y, Ito Y, Asashima M., Sci Rep. January 12, 2015; 5 11603.
Identification of novel peptides from amphibian (Xenopus tropicalis) skin by direct tissue MALDI-MS analysis., Shigeri Y, Yasuda A, Hagihara Y, Nishi K, Watanabe K, Imura T, Inagaki H, Haramoto Y, Ito Y, Asashima M., FEBS J. January 1, 2015; 282 (1): 102-13.
Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification., Yasuoka Y, Suzuki Y, Takahashi S, Someya H, Sudou N, Haramoto Y, Cho KW, Asashima M, Sugano S, Taira M., Nat Commun. July 9, 2014; 5 4322.
Characterization of the insulin-like growth factor binding protein family in Xenopus tropicalis., Haramoto Y, Oshima T, Takahashi S, Ito Y., Int J Dev Biol. January 1, 2014; 58 (9): 705-11.
Xnr3 affects brain patterning via cell migration in the neural-epidermal tissue boundary during early Xenopus embryogenesis., Morita M, Yamashita S, Matsukawa S, Haramoto Y, Takahashi S, Asashima M, Michiue T., Int J Dev Biol. January 1, 2013; 57 (9-10): 779-86.
Hippo signaling components, Mst1 and Mst2, act as a switch between self-renewal and differentiation in Xenopus hematopoietic and endothelial progenitors., Nejigane S, Takahashi S, Haramoto Y, Michiue T, Asashima M., Int J Dev Biol. January 1, 2013; 57 (5): 407-14.
The conserved Rieske oxygenase DAF-36/Neverland is a novel cholesterol-metabolizing enzyme., Yoshiyama-Yanagawa T, Enya S, Shimada-Niwa Y, Yaguchi S, Haramoto Y, Matsuya T, Shiomi K, Sasakura Y, Takahashi S, Asashima M, Kataoka H, Niwa R., J Biol Chem. July 22, 2011; 286 (29): 25756-62.
The transcriptional coactivators Yap and TAZ are expressed during early Xenopus development., Nejigane S, Haramoto Y, Okuno M, Takahashi S, Asashima M., Int J Dev Biol. January 1, 2011; 55 (1): 121-6.
XRASGRP2 is essential for blood vessel formation during Xenopus development., Suzuki K, Takahashi S, Haramoto Y, Onuma Y, Nagamine K, Okabayashi K, Hashizume K, Iwanaka T, Asashima M., Int J Dev Biol. January 1, 2010; 54 (4): 609-15.
Zygotic VegT is required for Xenopus paraxial mesoderm formation and is regulated by Nodal signaling and Eomesodermin., Fukuda M, Takahashi S, Haramoto Y, Onuma Y, Kim YJ, Yeo CY, Ishiura S, Asashima M., Int J Dev Biol. January 1, 2010; 54 (1): 81-92.
Bestrophin genes are expressed in Xenopus development., Onuma Y, Haramoto Y, Nejigane S, Takahashi S, Asashima M., Biochem Biophys Res Commun. July 3, 2009; 384 (3): 290-5.
Monomeric mature protein of Nodal-related 3 activates Xbra expression., Haramoto Y, Takahashi S, Asashima M., Dev Genes Evol. January 1, 2007; 217 (1): 29-37.
The N-terminus zinc finger domain of Xenopus SIP1 is important for neural induction, but not for suppression of Xbra expression., Nitta KR, Takahashi S, Haramoto Y, Fukuda M, Tanegashima K, Onuma Y, Asashima M., Int J Dev Biol. January 1, 2007; 51 (4): 321-5.
Expression of Sox1 during Xenopus early embryogenesis., Nitta KR, Takahashi S, Haramoto Y, Fukuda M, Onuma Y, Asashima M., Biochem Biophys Res Commun. December 8, 2006; 351 (1): 287-93.
Two distinct domains in pro-region of Nodal-related 3 are essential for BMP inhibition., Haramoto Y, Takahashi S, Asashima M., Biochem Biophys Res Commun. July 28, 2006; 346 (2): 470-8.
Xnr2 and Xnr5 unprocessed proteins inhibit Wnt signaling upstream of dishevelled., Onuma Y, Takahashi S, Haramoto Y, Tanegashima K, Yokota C, Whitman M, Asashima M., Dev Dyn. December 1, 2005; 234 (4): 900-10.
Xantivin suppresses the activity of EGF-CFC genes to regulate nodal signaling., Tanegashima K, Haramoto Y, Yokota C, Takahashi S, Asashima M., Int J Dev Biol. June 1, 2004; 48 (4): 275-83.
Tracing of Xenopus tropicalis germ plasm and presumptive primordial germ cells with the Xenopus tropicalis DAZ-like gene., Sekizaki H, Takahashi S, Tanegashima K, Onuma Y, Haramoto Y, Asashima M., Dev Dyn. February 1, 2004; 229 (2): 367-72.
Xenopus tropicalis nodal-related gene 3 regulates BMP signaling: an essential role for the pro-region., Haramoto Y, Tanegashima K, Onuma Y, Takahashi S, Sekizaki H, Asashima M., Dev Biol. January 1, 2004; 265 (1): 155-68.
FRL-1, a member of the EGF-CFC family, is essential for neural differentiation in Xenopus early development., Yabe S, Tanegashima K, Haramoto Y, Takahashi S, Fujii T, Kozuma S, Taketani Y, Asashima M., Development. May 1, 2003; 130 (10): 2071-81.
Chromosome mapping of Xenopus tropicalis using the G- and Ag-bands: tandem duplication and polyploidization of larvae heads., Uehara M, Haramoto Y, Sekizaki H, Takahashi S, Asashima M., Dev Growth Differ. October 1, 2002; 44 (5): 427-36.

Zbtb11 interacts with Otx2 and patterns the anterior neuroectoderm in Xenopus., Satou-Kobayashi Y, Takahashi S, Haramoto Y, Asashima M, Taira M., PLoS One. January 1, 2024; 19 (7): e0293852.

Identification of Novel Proteins in Foam Nests of the Japanese Forest Green Tree Frog, Rhacophorus arboreus., Shigeri Y, Nakata M, Kubota HY, Tomari N, Yamamoto Y, Uegaki K, Haramoto Y, Bumb C, Tanaka Y, Kinumi T, Inagaki H., Zoolog Sci. February 1, 2021; 38 (1): 8-19.

De novo transcription of multiple Hox cluster genes takes place simultaneously in early Xenopus tropicalis embryos., Kondo M, Matsuo M, Igarashi K, Haramoto Y, Yamamoto T, Yasuoka Y, Taira M., Biol Open. March 4, 2019; 8 (3):

Chromosome alignment maintenance requires the MAP RECQL4, mutated in the Rothmund-Thomson syndrome., Yokoyama H, Moreno-Andres D, Astrinidis SA, Hao Y, Weberruss M, Schellhaus AK, Lue H, Haramoto Y, Gruss OJ, Antonin W., Life Sci Alliance. February 4, 2019; 2 (1):

Identification and comparative analyses of Siamois cluster genes in Xenopus laevis and tropicalis., Haramoto Y, Saijyo T, Tanaka T, Furuno N, Suzuki A, Ito Y, Kondo M, Taira M, Takahashi S., Dev Biol. June 15, 2017; 426 (2): 374-383.

Genome evolution in the allotetraploid frog Xenopus laevis., Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS., Nature. October 20, 2016; 538 (7625): 336-343.

Complete mitochondrial genome of "Xenopus tropicalis" Asashima line (Anura: Pipidae), a possible undescribed species., Haramoto Y, Oshima T, Takahashi S, Asashima M, Ito Y, Kurabayashi A., Mitochondrial DNA A DNA Mapp Seq Anal. September 1, 2016; 27 (5): 3341-3.

Physicochemical and biological characterizations of Pxt peptides from amphibian (Xenopus tropicalis) skin., Shigeri Y, Horie M, Yoshida T, Hagihara Y, Imura T, Inagaki H, Haramoto Y, Ito Y, Asashima M., J Biochem. June 1, 2016; 159 (6): 619-29.

Insulin-like factor regulates neural induction through an IGF1 receptor-independent mechanism., Haramoto Y, Takahashi S, Oshima T, Onuma Y, Ito Y, Asashima M., Sci Rep. January 12, 2015; 5 11603.

Identification of novel peptides from amphibian (Xenopus tropicalis) skin by direct tissue MALDI-MS analysis., Shigeri Y, Yasuda A, Hagihara Y, Nishi K, Watanabe K, Imura T, Inagaki H, Haramoto Y, Ito Y, Asashima M., FEBS J. January 1, 2015; 282 (1): 102-13.

Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification., Yasuoka Y, Suzuki Y, Takahashi S, Someya H, Sudou N, Haramoto Y, Cho KW, Asashima M, Sugano S, Taira M., Nat Commun. July 9, 2014; 5 4322.

Characterization of the insulin-like growth factor binding protein family in Xenopus tropicalis., Haramoto Y, Oshima T, Takahashi S, Ito Y., Int J Dev Biol. January 1, 2014; 58 (9): 705-11.

Xnr3 affects brain patterning via cell migration in the neural-epidermal tissue boundary during early Xenopus embryogenesis., Morita M, Yamashita S, Matsukawa S, Haramoto Y, Takahashi S, Asashima M, Michiue T., Int J Dev Biol. January 1, 2013; 57 (9-10): 779-86.

Hippo signaling components, Mst1 and Mst2, act as a switch between self-renewal and differentiation in Xenopus hematopoietic and endothelial progenitors., Nejigane S, Takahashi S, Haramoto Y, Michiue T, Asashima M., Int J Dev Biol. January 1, 2013; 57 (5): 407-14.

The conserved Rieske oxygenase DAF-36/Neverland is a novel cholesterol-metabolizing enzyme., Yoshiyama-Yanagawa T, Enya S, Shimada-Niwa Y, Yaguchi S, Haramoto Y, Matsuya T, Shiomi K, Sasakura Y, Takahashi S, Asashima M, Kataoka H, Niwa R., J Biol Chem. July 22, 2011; 286 (29): 25756-62.

The transcriptional coactivators Yap and TAZ are expressed during early Xenopus development., Nejigane S, Haramoto Y, Okuno M, Takahashi S, Asashima M., Int J Dev Biol. January 1, 2011; 55 (1): 121-6.

XRASGRP2 is essential for blood vessel formation during Xenopus development., Suzuki K, Takahashi S, Haramoto Y, Onuma Y, Nagamine K, Okabayashi K, Hashizume K, Iwanaka T, Asashima M., Int J Dev Biol. January 1, 2010; 54 (4): 609-15.

Zygotic VegT is required for Xenopus paraxial mesoderm formation and is regulated by Nodal signaling and Eomesodermin., Fukuda M, Takahashi S, Haramoto Y, Onuma Y, Kim YJ, Yeo CY, Ishiura S, Asashima M., Int J Dev Biol. January 1, 2010; 54 (1): 81-92.

Bestrophin genes are expressed in Xenopus development., Onuma Y, Haramoto Y, Nejigane S, Takahashi S, Asashima M., Biochem Biophys Res Commun. July 3, 2009; 384 (3): 290-5.

Monomeric mature protein of Nodal-related 3 activates Xbra expression., Haramoto Y, Takahashi S, Asashima M., Dev Genes Evol. January 1, 2007; 217 (1): 29-37.

The N-terminus zinc finger domain of Xenopus SIP1 is important for neural induction, but not for suppression of Xbra expression., Nitta KR, Takahashi S, Haramoto Y, Fukuda M, Tanegashima K, Onuma Y, Asashima M., Int J Dev Biol. January 1, 2007; 51 (4): 321-5.

Expression of Sox1 during Xenopus early embryogenesis., Nitta KR, Takahashi S, Haramoto Y, Fukuda M, Onuma Y, Asashima M., Biochem Biophys Res Commun. December 8, 2006; 351 (1): 287-93.

Two distinct domains in pro-region of Nodal-related 3 are essential for BMP inhibition., Haramoto Y, Takahashi S, Asashima M., Biochem Biophys Res Commun. July 28, 2006; 346 (2): 470-8.

Xnr2 and Xnr5 unprocessed proteins inhibit Wnt signaling upstream of dishevelled., Onuma Y, Takahashi S, Haramoto Y, Tanegashima K, Yokota C, Whitman M, Asashima M., Dev Dyn. December 1, 2005; 234 (4): 900-10.

Xantivin suppresses the activity of EGF-CFC genes to regulate nodal signaling., Tanegashima K, Haramoto Y, Yokota C, Takahashi S, Asashima M., Int J Dev Biol. June 1, 2004; 48 (4): 275-83.

Tracing of Xenopus tropicalis germ plasm and presumptive primordial germ cells with the Xenopus tropicalis DAZ-like gene., Sekizaki H, Takahashi S, Tanegashima K, Onuma Y, Haramoto Y, Asashima M., Dev Dyn. February 1, 2004; 229 (2): 367-72.

Xenopus tropicalis nodal-related gene 3 regulates BMP signaling: an essential role for the pro-region., Haramoto Y, Tanegashima K, Onuma Y, Takahashi S, Sekizaki H, Asashima M., Dev Biol. January 1, 2004; 265 (1): 155-68.

FRL-1, a member of the EGF-CFC family, is essential for neural differentiation in Xenopus early development., Yabe S, Tanegashima K, Haramoto Y, Takahashi S, Fujii T, Kozuma S, Taketani Y, Asashima M., Development. May 1, 2003; 130 (10): 2071-81.

Chromosome mapping of Xenopus tropicalis using the G- and Ag-bands: tandem duplication and polyploidization of larvae heads., Uehara M, Haramoto Y, Sekizaki H, Takahashi S, Asashima M., Dev Growth Differ. October 1, 2002; 44 (5): 427-36.

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