Shifeng Xue - Publications

Publications (9)

XB-PERS-3775

Publications By Shifeng Xue

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Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus., Nguyen TA, Heng JWJ, Ng YT, Sun R, Fisher S, Oguz G, Kaewsapsak P, Xue S, Reversade B, Ramasamy A, Eisenberg E, Tan MH., BMC Biol. November 9, 2023; 21 (1): 251.
Direct identification of A-to-I editing sites with nanopore native RNA sequencing., Nguyen TA, Heng JWJ, Kaewsapsak P, Kok EPL, Stanojević D, Liu H, Cardilla A, Praditya A, Yi Z, Lin M, Aw JGA, Ho YY, Peh KLE, Wang Y, Zhong Q, Heraud-Farlow J, Xue S, Reversade B, Walkley C, Ho YS, Šikić M, Wan Y, Tan MH., Nat Methods. July 1, 2022; 19 (7): 833-844.
Identification of vacuolar phosphate efflux transporters in land plants., Xu L, Zhao H, Wan R, Liu Y, Xu Z, Tian W, Ruan W, Wang F, Deng M, Wang J, Dolan L, Luan S, Xue S, Yi K., Nat Plants. January 1, 2019; 5 (1): 84-94.
FSHD2- and BAMS-associated mutations confer opposing effects on SMCHD1 function., Gurzau AD, Chen K, Xue S, Dai W, Lucet IS, Ly TTN, Reversade B, Blewitt ME, Murphy JM., J Biol Chem. June 22, 2018; 293 (25): 9841-9853.
De novo mutations in SMCHD1 cause Bosma arhinia microphthalmia syndrome and abrogate nasal development., Gordon CT, Xue S, Yigit G, Filali H, Chen K, Rosin N, Yoshiura KI, Oufadem M, Beck TJ, McGowan R, Magee AC, Altmüller J, Dion C, Thiele H, Gurzau AD, Nürnberg P, Meschede D, Mühlbauer W, Okamoto N, Varghese V, Irving R, Sigaudy S, Williams D, Ahmed SF, Bonnard C, Kong MK, Ratbi I, Fejjal N, Fikri M, Elalaoui SC, Reigstad H, Bole-Feysot C, Nitschké P, Ragge N, Lévy N, Tunçbilek G, Teo AS, Cunningham ML, Sefiani A, Kayserili H, Murphy JM, Chatdokmaiprai C, Hillmer AM, Wattanasirichaigoon D, Lyonnet S, Magdinier F, Javed A, Blewitt ME, Amiel J, Wollnik B, Reversade B., Nat Genet. February 1, 2017; 49 (2): 249-255.
Nitric oxide negatively regulates AKT1-mediated potassium uptake through modulating vitamin B6 homeostasis in Arabidopsis., Xia J, Kong D, Xue S, Tian W, Li N, Bao F, Hu Y, Du J, Wang Y, Pan X, Wang L, Zhang X, Niu G, Feng X, Li L, He Y., Proc Natl Acad Sci U S A. November 11, 2014; 111 (45): 16196-201.
Reconstitution of abscisic acid activation of SLAC1 anion channel by CPK6 and OST1 kinases and branched ABI1 PP2C phosphatase action., Brandt B, Brodsky DE, Xue S, Negi J, Iba K, Kangasjärvi J, Ghassemian M, Stephan AB, Hu H, Schroeder JI., Proc Natl Acad Sci U S A. June 26, 2012; 109 (26): 10593-8.
AtHKT1;1 mediates nernstian sodium channel transport properties in Arabidopsis root stelar cells., Xue S, Yao X, Luo W, Jha D, Tester M, Horie T, Schroeder JI., PLoS One. January 1, 2011; 6 (9): e24725.
Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells., Yao X, Horie T, Xue S, Leung HY, Katsuhara M, Brodsky DE, Wu Y, Schroeder JI., Plant Physiol. January 1, 2010; 152 (1): 341-55.

Deep transcriptome profiling reveals limited conservation of A-to-I RNA editing in Xenopus., Nguyen TA, Heng JWJ, Ng YT, Sun R, Fisher S, Oguz G, Kaewsapsak P, Xue S, Reversade B, Ramasamy A, Eisenberg E, Tan MH., BMC Biol. November 9, 2023; 21 (1): 251.

Direct identification of A-to-I editing sites with nanopore native RNA sequencing., Nguyen TA, Heng JWJ, Kaewsapsak P, Kok EPL, Stanojević D, Liu H, Cardilla A, Praditya A, Yi Z, Lin M, Aw JGA, Ho YY, Peh KLE, Wang Y, Zhong Q, Heraud-Farlow J, Xue S, Reversade B, Walkley C, Ho YS, Šikić M, Wan Y, Tan MH., Nat Methods. July 1, 2022; 19 (7): 833-844.

Identification of vacuolar phosphate efflux transporters in land plants., Xu L, Zhao H, Wan R, Liu Y, Xu Z, Tian W, Ruan W, Wang F, Deng M, Wang J, Dolan L, Luan S, Xue S, Yi K., Nat Plants. January 1, 2019; 5 (1): 84-94.

FSHD2- and BAMS-associated mutations confer opposing effects on SMCHD1 function., Gurzau AD, Chen K, Xue S, Dai W, Lucet IS, Ly TTN, Reversade B, Blewitt ME, Murphy JM., J Biol Chem. June 22, 2018; 293 (25): 9841-9853.

De novo mutations in SMCHD1 cause Bosma arhinia microphthalmia syndrome and abrogate nasal development., Gordon CT, Xue S, Yigit G, Filali H, Chen K, Rosin N, Yoshiura KI, Oufadem M, Beck TJ, McGowan R, Magee AC, Altmüller J, Dion C, Thiele H, Gurzau AD, Nürnberg P, Meschede D, Mühlbauer W, Okamoto N, Varghese V, Irving R, Sigaudy S, Williams D, Ahmed SF, Bonnard C, Kong MK, Ratbi I, Fejjal N, Fikri M, Elalaoui SC, Reigstad H, Bole-Feysot C, Nitschké P, Ragge N, Lévy N, Tunçbilek G, Teo AS, Cunningham ML, Sefiani A, Kayserili H, Murphy JM, Chatdokmaiprai C, Hillmer AM, Wattanasirichaigoon D, Lyonnet S, Magdinier F, Javed A, Blewitt ME, Amiel J, Wollnik B, Reversade B., Nat Genet. February 1, 2017; 49 (2): 249-255.

Nitric oxide negatively regulates AKT1-mediated potassium uptake through modulating vitamin B6 homeostasis in Arabidopsis., Xia J, Kong D, Xue S, Tian W, Li N, Bao F, Hu Y, Du J, Wang Y, Pan X, Wang L, Zhang X, Niu G, Feng X, Li L, He Y., Proc Natl Acad Sci U S A. November 11, 2014; 111 (45): 16196-201.

Reconstitution of abscisic acid activation of SLAC1 anion channel by CPK6 and OST1 kinases and branched ABI1 PP2C phosphatase action., Brandt B, Brodsky DE, Xue S, Negi J, Iba K, Kangasjärvi J, Ghassemian M, Stephan AB, Hu H, Schroeder JI., Proc Natl Acad Sci U S A. June 26, 2012; 109 (26): 10593-8.

AtHKT1;1 mediates nernstian sodium channel transport properties in Arabidopsis root stelar cells., Xue S, Yao X, Luo W, Jha D, Tester M, Horie T, Schroeder JI., PLoS One. January 1, 2011; 6 (9): e24725.

Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells., Yao X, Horie T, Xue S, Leung HY, Katsuhara M, Brodsky DE, Wu Y, Schroeder JI., Plant Physiol. January 1, 2010; 152 (1): 341-55.

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