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Uncovering the mesendoderm gene regulatory network through multi-omic data integration. , Jansen C, Paraiso KD , Zhou JJ , Blitz IL , Fish MB, Charney RM , Cho JS, Yasuoka Y , Sudou N , Bright AR, Wlizla M , Veenstra GJC , Taira M , Zorn AM , Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.
Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. , Mukherjee S , Chaturvedi P , Rankin SA , Fish MB, Wlizla M , Paraiso KD , MacDonald M, Chen X, Weirauch MT, Blitz IL , Cho KW , Zorn AM ., Elife. September 7, 2020; 9
Early Xenopus gene regulatory programs, chromatin states, and the role of maternal transcription factors. , Paraiso KD , Cho JS, Yong J, Cho KWY., Curr Top Dev Biol. January 1, 2020; 139 35-60.
Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation. , Paraiso KD , Blitz IL , Coley M, Cheung J, Sudou N , Taira M , Cho KWY ., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.
Morpholinos Do Not Elicit an Innate Immune Response during Early Xenopus Embryogenesis. , Paraiso KD , Blitz IL , Zhou JJ , Cho KWY ., Dev Cell. May 20, 2019; 49 (4): 643-650.e3.
Developmentally regulated long non-coding RNAs in Xenopus tropicalis. , Forouzmand E, Owens NDL, Blitz IL , Paraiso KD , Khokha MK , Gilchrist MJ , Xie X, Cho KWY ., Dev Biol. June 15, 2017; 426 (2): 401-408.
A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo. , Blitz IL , Paraiso KD , Patrushev I , Chiu WTY , Cho KWY , Gilchrist MJ ., Dev Biol. June 15, 2017; 426 (2): 409-417.
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program. , Charney RM , Forouzmand E, Cho JS, Cheung J, Paraiso KD , Yasuoka Y , Takahashi S , Taira M , Blitz IL , Xie X, Cho KW ., Dev Cell. March 27, 2017; 40 (6): 595-607.e4.