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Xenbase: key features and resources of the Xenopus model organism knowledgebase. , Fisher M , James-Zorn C , Ponferrada V , Bell AJ , Sundararaj N , Segerdell E , Chaturvedi P , Bayyari N , Chu S , Pells T , Lotay V , Agalakov S , Wang DZ, Arshinoff BI , Foley S, Karimi K , Vize PD , Zorn AM ., Genetics. May 4, 2023; 224 (1):
The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development. , Fisher ME , Segerdell E , Matentzoglu N, Nenni MJ , Fortriede JD , Chu S , Pells TJ , Osumi-Sutherland D, Chaturvedi P , James-Zorn C , Sundararaj N , Lotay VS , Ponferrada V , Wang DZ , Kim E , Agalakov S , Arshinoff BI , Karimi K , Vize PD , Zorn AM ., BMC Bioinformatics. March 22, 2022; 23 (1): 99.
Tbx5 drives Aldh1a2 expression to regulate a RA- Hedgehog-Wnt gene regulatory network coordinating cardiopulmonary development. , Rankin SA , Steimle JD, Yang XH, Rydeen AB, Agarwal K, Chaturvedi P , Ikegami K, Herriges MJ, Moskowitz IP, Zorn AM ., Elife. October 13, 2021; 10
Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. , Mukherjee S , Chaturvedi P , Rankin SA , Fish MB, Wlizla M , Paraiso KD , MacDonald M, Chen X, Weirauch MT, Blitz IL , Cho KW , Zorn AM ., Elife. September 7, 2020; 9
Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. , Fortriede JD , Pells TJ , Chu S , Chaturvedi P , Wang D, Fisher ME , James-Zorn C , Wang Y, Nenni MJ , Burns KA , Lotay VS , Ponferrada VG , Karimi K , Zorn AM , Vize PD ., Nucleic Acids Res. January 8, 2020; 48 (D1): D776-D782.
Xenbase: Facilitating the Use of Xenopus to Model Human Disease. , Nenni MJ , Fisher ME , James-Zorn C , Pells TJ , Ponferrada V , Chu S , Fortriede JD , Burns KA , Wang Y, Lotay VS , Wang DZ, Segerdell E , Chaturvedi P , Karimi K , Vize PD , Zorn AM ., Front Physiol. January 1, 2019; 10 154.
Xenbase: a genomic, epigenomic and transcriptomic model organism database. , Karimi K , Fortriede JD , Lotay VS , Burns KA , Wang DZ , Fisher ME , Pells TJ , James-Zorn C , Wang Y, Ponferrada VG , Chu S , Chaturvedi P , Zorn AM , Vize PD ., Nucleic Acids Res. January 4, 2018; 46 (D1): D861-D868.
Genomic integration of Wnt/ β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs. , Stevens ML , Chaturvedi P , Rankin SA , Macdonald M, Jagannathan S, Yukawa M, Barski A, Zorn AM ., Development. April 1, 2017; 144 (7): 1283-1295.