Lyle Zimmerman - Publications

Publications (26)

XB-PERS-748

Publications By Lyle Zimmerman

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Coexistence of Y, W, and Z sex chromosomes in Xenopus tropicalis., Roco ÁS, Olmstead AW, Degitz SJ, Amano T, Zimmerman LB, Bullejos M., Proc Natl Acad Sci U S A. August 25, 2015; 112 (34): E4752-61.
Contractile activity is required for Z-disc sarcomere maturation in vivo., Geach TJ, Hirst EM, Zimmerman LB., Genesis. May 1, 2015; 53 (5): 299-307.
Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements., Harding JL, Horswell S, Heliot C, Armisen J, Zimmerman LB, Luscombe NM, Miska EA, Hill CS., Genome Res. January 1, 2014; 24 (1): 96-106.
Efficient high-throughput sequencing of a laser microdissected chromosome arm., Seifertova E, Zimmerman LB, Gilchrist MJ, Macha J, Kubickova S, Cernohorska H, Zarsky V, Owens ND, Sesay AK, Tlapakova T, Krylov V., BMC Genomics. May 28, 2013; 14 357.
A large pseudoautosomal region on the sex chromosomes of the frog Silurana tropicalis., Bewick AJ, Chain FJ, Zimmerman LB, Sesay A, Gilchrist MJ, Owens ND, Seifertova E, Krylov V, Macha J, Tlapakova T, Kubickova S, Cernohorska H, Zarsky V, Evans BJ., Genome Biol Evol. January 1, 2013; 5 (6): 1087-98.
Deep ancestry of mammalian X chromosome revealed by comparison with the basal tetrapod Xenopus tropicalis., Mácha J, Teichmanová R, Sater AK, Wells DE, Tlapáková T, Zimmerman LB, Krylov V., BMC Genomics. July 16, 2012; 13 315.
The hitchhiker's guide to Xenopus genetics., Abu-Daya A, Khokha MK, Zimmerman LB., Genesis. March 1, 2012; 50 (3): 164-75.
Genetic analysis of Xenopus tropicalis., Geach TJ, Stemple DL, Zimmerman LB., Methods Mol Biol. January 1, 2012; 917 69-110.
Husbandry of Xenopus tropicalis., Jafkins A, Abu-Daya A, Noble A, Zimmerman LB, Guille M., Methods Mol Biol. January 1, 2012; 917 17-31.
Evolutionary importance of translation elongation factor eEF1A variant switching: eEF1A1 down-regulation in muscle is conserved in Xenopus but is controlled at a post-transcriptional level., Newbery HJ, Stancheva I, Zimmerman LB, Abbott CM., Biochem Biophys Res Commun. July 22, 2011; 411 (1): 19-24.
The secreted integrin ligand nephronectin is necessary for forelimb formation in Xenopus tropicalis., Abu-Daya A, Nishimoto S, Fairclough L, Mohun TJ, Logan MP, Zimmerman LB., Dev Biol. January 15, 2011; 349 (2): 204-12.
Developmental genetics in Xenopus tropicalis., Geach TJ, Zimmerman LB., Methods Mol Biol. January 1, 2011; 770 77-117.
The genome of the Western clawed frog Xenopus tropicalis., Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS., Science. April 30, 2010; 328 (5978): 633-6.
Paralysis and delayed Z-disc formation in the Xenopus tropicalis unc45b mutant dicky ticker., Geach TJ, Zimmerman LB., BMC Dev Biol. January 22, 2010; 10 75.
Expression profiling the temperature-dependent amphibian response to infection by Batrachochytrium dendrobatidis., Ribas L, Li MS, Doddington BJ, Robert J, Seidel JA, Kroll JS, Zimmerman LB, Grassly NC, Garner TW, Fisher MC., PLoS One. December 22, 2009; 4 (12): e8408.
Absence of heartbeat in the Xenopus tropicalis mutation muzak is caused by a nonsense mutation in cardiac myosin myh6., Abu-Daya A, Sater AK, Wells DE, Mohun TJ, Zimmerman LB., Dev Biol. December 1, 2009; 336 (1): 20-9.
Rapid gynogenetic mapping of Xenopus tropicalis mutations to chromosomes., Khokha MK, Krylov V, Reilly MJ, Gall JG, Bhattacharya D, Cheung CY, Kaufman S, Lam DK, Macha J, Ngo C, Prakash N, Schmidt P, Tlapakova T, Trivedi T, Tumova L, Abu-Daya A, Geach T, Vendrell E, Ironfield H, Sinzelle L, Sater AK, Wells DE, Harland RM, Zimmerman LB., Dev Dyn. June 1, 2009; 238 (6): 1398-46.
Bio-electrospraying living Xenopus tropicalis embryos: investigating the structural, functional and biological integrity of a model organism., Geach TJ, Mongkoldhumrongkul N, Zimmerman LB, Jayasinghe SN., Analyst. April 1, 2009; 134 (4): 743-7.
Genetic screens for mutations affecting development of Xenopus tropicalis., Goda T, Abu-Daya A, Carruthers S, Clark MD, Stemple DL, Zimmerman LB., PLoS Genet. June 1, 2006; 2 (6): e91.
A gynogenetic screen to isolate naturally occurring recessive mutations in Xenopus tropicalis., Noramly S, Zimmerman L, Cox A, Aloise R, Fisher M, Grainger RM., Mech Dev. March 1, 2005; 122 (3): 273-87.
Xenopus tropicalis transgenic lines and their use in the study of embryonic induction., Hirsch N, Zimmerman LB, Gray J, Chae J, Curran KL, Fisher M, Ogino H, Grainger RM., Dev Dyn. December 1, 2002; 225 (4): 522-35.
Xenopus, the next generation: X. tropicalis genetics and genomics., Hirsch N, Zimmerman LB, Grainger RM., Dev Dyn. December 1, 2002; 225 (4): 422-33.
Inducible control of tissue-specific transgene expression in Xenopus tropicalis transgenic lines., Chae J, Zimmerman LB, Grainger RM., Mech Dev. September 1, 2002; 117 (1-2): 235-41.
The Spemann organizer signal noggin binds and inactivates bone morphogenetic protein 4., Zimmerman LB, De Jesús-Escobar JM, Harland RM., Cell. August 23, 1996; 86 (4): 599-606.
Sequence and localization of human NASP: conservation of a Xenopus histone-binding protein., O'Rand MG, Richardson RT, Zimmerman LJ, Widgren EE., Dev Biol. November 1, 1992; 154 (1): 37-44.
Characterization of a sperm-specific nuclear autoantigenic protein. I. Complete sequence and homology with the Xenopus protein, N1/N2., Welch JE, Zimmerman LJ, Joseph DR, O'Rand MG., Biol Reprod. October 1, 1990; 43 (4): 559-68.

Coexistence of Y, W, and Z sex chromosomes in Xenopus tropicalis., Roco ÁS, Olmstead AW, Degitz SJ, Amano T, Zimmerman LB, Bullejos M., Proc Natl Acad Sci U S A. August 25, 2015; 112 (34): E4752-61.

Contractile activity is required for Z-disc sarcomere maturation in vivo., Geach TJ, Hirst EM, Zimmerman LB., Genesis. May 1, 2015; 53 (5): 299-307.

Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements., Harding JL, Horswell S, Heliot C, Armisen J, Zimmerman LB, Luscombe NM, Miska EA, Hill CS., Genome Res. January 1, 2014; 24 (1): 96-106.

Efficient high-throughput sequencing of a laser microdissected chromosome arm., Seifertova E, Zimmerman LB, Gilchrist MJ, Macha J, Kubickova S, Cernohorska H, Zarsky V, Owens ND, Sesay AK, Tlapakova T, Krylov V., BMC Genomics. May 28, 2013; 14 357.

A large pseudoautosomal region on the sex chromosomes of the frog Silurana tropicalis., Bewick AJ, Chain FJ, Zimmerman LB, Sesay A, Gilchrist MJ, Owens ND, Seifertova E, Krylov V, Macha J, Tlapakova T, Kubickova S, Cernohorska H, Zarsky V, Evans BJ., Genome Biol Evol. January 1, 2013; 5 (6): 1087-98.

Deep ancestry of mammalian X chromosome revealed by comparison with the basal tetrapod Xenopus tropicalis., Mácha J, Teichmanová R, Sater AK, Wells DE, Tlapáková T, Zimmerman LB, Krylov V., BMC Genomics. July 16, 2012; 13 315.

The hitchhiker's guide to Xenopus genetics., Abu-Daya A, Khokha MK, Zimmerman LB., Genesis. March 1, 2012; 50 (3): 164-75.

Genetic analysis of Xenopus tropicalis., Geach TJ, Stemple DL, Zimmerman LB., Methods Mol Biol. January 1, 2012; 917 69-110.

Husbandry of Xenopus tropicalis., Jafkins A, Abu-Daya A, Noble A, Zimmerman LB, Guille M., Methods Mol Biol. January 1, 2012; 917 17-31.

Evolutionary importance of translation elongation factor eEF1A variant switching: eEF1A1 down-regulation in muscle is conserved in Xenopus but is controlled at a post-transcriptional level., Newbery HJ, Stancheva I, Zimmerman LB, Abbott CM., Biochem Biophys Res Commun. July 22, 2011; 411 (1): 19-24.

The secreted integrin ligand nephronectin is necessary for forelimb formation in Xenopus tropicalis., Abu-Daya A, Nishimoto S, Fairclough L, Mohun TJ, Logan MP, Zimmerman LB., Dev Biol. January 15, 2011; 349 (2): 204-12.

Developmental genetics in Xenopus tropicalis., Geach TJ, Zimmerman LB., Methods Mol Biol. January 1, 2011; 770 77-117.

The genome of the Western clawed frog Xenopus tropicalis., Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS., Science. April 30, 2010; 328 (5978): 633-6.

Paralysis and delayed Z-disc formation in the Xenopus tropicalis unc45b mutant dicky ticker., Geach TJ, Zimmerman LB., BMC Dev Biol. January 22, 2010; 10 75.

Expression profiling the temperature-dependent amphibian response to infection by Batrachochytrium dendrobatidis., Ribas L, Li MS, Doddington BJ, Robert J, Seidel JA, Kroll JS, Zimmerman LB, Grassly NC, Garner TW, Fisher MC., PLoS One. December 22, 2009; 4 (12): e8408.

Absence of heartbeat in the Xenopus tropicalis mutation muzak is caused by a nonsense mutation in cardiac myosin myh6., Abu-Daya A, Sater AK, Wells DE, Mohun TJ, Zimmerman LB., Dev Biol. December 1, 2009; 336 (1): 20-9.

Rapid gynogenetic mapping of Xenopus tropicalis mutations to chromosomes., Khokha MK, Krylov V, Reilly MJ, Gall JG, Bhattacharya D, Cheung CY, Kaufman S, Lam DK, Macha J, Ngo C, Prakash N, Schmidt P, Tlapakova T, Trivedi T, Tumova L, Abu-Daya A, Geach T, Vendrell E, Ironfield H, Sinzelle L, Sater AK, Wells DE, Harland RM, Zimmerman LB., Dev Dyn. June 1, 2009; 238 (6): 1398-46.

Bio-electrospraying living Xenopus tropicalis embryos: investigating the structural, functional and biological integrity of a model organism., Geach TJ, Mongkoldhumrongkul N, Zimmerman LB, Jayasinghe SN., Analyst. April 1, 2009; 134 (4): 743-7.

Genetic screens for mutations affecting development of Xenopus tropicalis., Goda T, Abu-Daya A, Carruthers S, Clark MD, Stemple DL, Zimmerman LB., PLoS Genet. June 1, 2006; 2 (6): e91.

A gynogenetic screen to isolate naturally occurring recessive mutations in Xenopus tropicalis., Noramly S, Zimmerman L, Cox A, Aloise R, Fisher M, Grainger RM., Mech Dev. March 1, 2005; 122 (3): 273-87.

Xenopus tropicalis transgenic lines and their use in the study of embryonic induction., Hirsch N, Zimmerman LB, Gray J, Chae J, Curran KL, Fisher M, Ogino H, Grainger RM., Dev Dyn. December 1, 2002; 225 (4): 522-35.

Xenopus, the next generation: X. tropicalis genetics and genomics., Hirsch N, Zimmerman LB, Grainger RM., Dev Dyn. December 1, 2002; 225 (4): 422-33.

Inducible control of tissue-specific transgene expression in Xenopus tropicalis transgenic lines., Chae J, Zimmerman LB, Grainger RM., Mech Dev. September 1, 2002; 117 (1-2): 235-41.

The Spemann organizer signal noggin binds and inactivates bone morphogenetic protein 4., Zimmerman LB, De Jesús-Escobar JM, Harland RM., Cell. August 23, 1996; 86 (4): 599-606.

Sequence and localization of human NASP: conservation of a Xenopus histone-binding protein., O'Rand MG, Richardson RT, Zimmerman LJ, Widgren EE., Dev Biol. November 1, 1992; 154 (1): 37-44.

Characterization of a sperm-specific nuclear autoantigenic protein. I. Complete sequence and homology with the Xenopus protein, N1/N2., Welch JE, Zimmerman LJ, Joseph DR, O'Rand MG., Biol Reprod. October 1, 1990; 43 (4): 559-68.

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