XB-CLONE-3389734
Clone Name: IMAGE:7652445
|
Gene:
nr4a1
|
Species: Xenopus tropicalis
|
|
|
Sequence:
Full length sequence: BC121356
[+]
CATTCCTCTCACTGGCACCGTGCAACACGCTGACCCCAGCGGACAGCCCGTACCGGGGACTTACAGCTGGGAGATCTGGTATGTCAGCTTAGCTTGCCAT
TCCAATCACAAGGTGCCACAGGGGTTAATAGCTATCTAGATACATCCCTTTGGGAGGTAGACATGCATGCAAGGGGGACAGAAATGCCCTGTATTCAAGC
ACAGCATGGAAGTCTGTCTCAATGTGCAGGTCCCTGTGACAACTATGTACCAGACATCTTAAATTCTGAGTTTGGCAAATTCACCATGGACCTTGTTAAC
AGTGAAATTGCAGCTTCCACCTCCTTGCCCAGTTTTAGCACTTTCATGGACGGATACACCGGAGAATTTGACGCCTTTCTTTACCAGATTCCTTCTTCAA
ATCAGCAGTCCTCACTGAAAGTGGAGGAATTCCAGGTTTTTGGTTGCTACCCAGGTTCCTTCACAAACCAACTGGACGAAACCATGTCCTCCAGTGGATC
AGACTATTATGGTAGTCCCTGCTCTATCCCATCTCCTTCAACCCCAGGGTTCCAGAACCCTCAGCTGCCCACTTGGGAGTGTTCCTATGGTGCATACTCA
CCAACTCAGAACTATGACAACATGCGGCATTGGACCGAGCAACAGAAAAGCAGTATTTCACAGCAGACTTTCTTTTCTTTTGGCACTCCAGCTCACAGCC
CAAACATGGCTGCCAATCCCATGAAGATAGCTCCTGCAACACACAGACTTGATCAGCAAGTTGTGGATGCTGATGTTTTTGCTTTGGCACAGAACTCTTC
AGCAGGCTTTCCTGCTATCCCTCTTGGTCAGGCACCTGGGGTACTTGACAACTCCGTTTTACTGGACAGTCCTTTATCTCCTTCAAAAACACGGAGTCCC
AGTTCTAATGAGGGACGCTGTGCTGTGTGTGGGGATAATGCTTCCTGTCAGCATTACGGAGTACGGACCTGTGAAGGATGTAAAGGATTTTTTAAGAGAA
CTGTACAGAAAAATGCCAAGTACATCTGCTTGGCTAACAAGGACTGTCCCGTGGACAAAAGACGACGGAATCGCTGCCAGTTTTGCCGGTTCCAGAAATG
CTTAGCAGTGGGAATGGTAAAAGAAGTTGTACGGACTGACAGTTTGAAGGGCAGGAGAGGTCGGCTCCCATCAAAACCAAAACAAATTGCAGAATCATCG
CCAGTCAGTCTGATCAATTCGCTGGTGCGAGCGCACATTGACTCAATCCCCAGCTCCTCTAAATTGGACTATTCCAAGTTCCAGGAAAACGTGCCTGTCC
AGTTAGAAAAAGAAAGCTCTGCTGATGTGCAGCAGTTCTACGACCTTCTCTCTGGTTCACTGGAAGTCATTCGCAAGTGGGCTGAGAAAATTCAGGGATT
TGTGGAGCTCCCCAAAGAAGATCAAGACCTACTGCTTGAATCCGCCTTTCTAGAGCTTTTCATTCTGCGCCTGGCTTACAGGTCAAGACCAGAAGAAGGA
AAGCTGATATTCTGCAATGGTGTTGTGCTTCATCGCACACAGTGTGTCCGAGGCTTTGGAGAGTGGATAGATTCAATCATTGAGTTTTCCCACAACCTCC
AGCGCACAAACATTGATGTCCCATCCTTCTCCTGCCTTTCGGCTCTTGTCATTATCACAGATCGACATGGCTTGAAAGAACCGAAGAAAGTTGAGGAGCT
TCAAAGCCGGATTATCAACTGCCTTAAAGAGCATGTCCCCTCCTCTATGAATGAGCAGAACAGACCCAACTGCCTGTCCAAGCTTCTGGGGAAACTTCCA
GAGCTCCGCACCCTCTGTACGCAGGGTCTTCAGCGTATCTTTTACTTAAAACTAGAAGATCTGGTGCCTCCCCCTCCTATTGTGGATAAGATCTTTATGG
ATACTTTACCCTTTTAAAACTGCTCTGCTTTTGCCTTTGGGCCCAGAGATGCTCTAAGTGAAAAGAGGAAACTCTTGGAACATTCAAATATTTTGACATT
CGGTGCCTTGGCCAGCAGATTTGCAATGCAGTGTGATCTACTGGATCTTACTAGGAGTCTTTATTTTTAATACTACAGAGAACCCCGATGTGCCTTTGGC
TCAAAGTGACTTTTTCCATTATTTCCCCCTTTCTTCAATCGTCTCATGTTTAAACATGTTTTTTTATTGAAACACTTGCAGAGATCATCTGGTTCTGAAA
CAGCCTTCCTCTCACTGCTTCTGTAGATTGGGTCTGTCCTGCTACAAAAACTCACCCCTTTAAATGCAACTGTTCCCAAATAGGTCAGAAAGGATGGACC
CACCACAATCACAGCCAGTTTGTAAAGTCTTGTACATAGAACTAAGAGAAAATTGTAAATAGGTCTGTGAAATGCAAAGCTGCCCTCTTCAGCTGTGACT
TTGGTTCCCACAGCCCTTTGAGCTGTGTGTAAATATGTGTAATTTTTGAAAAGAAACATTTATATTTGTGTATCTTACTGGATTTACAGTATGTGGTTTT
TTTCCCGATTAATATATATTTAATATATTGAATAAAAAATTTGCTGTAATAAAAAAAAAAAAAAA
5' EST: CX815194
[+]cattcctctcactggcaccgtgcaacacgctgaccccagcggacagcccgtaccggggacttacagctgggagatctggtatgtcagcttagcttgccat
tccaatcacaaggtgccacaggggttaatagctatctagatacatccctttgggaggtagacatgcatgcaagggggacagaaatgccctgtattcaagc
acagcatggaagtctgtctcaatgtgcaggtccctgtgacaactatgtaccagacatcttaaattctgagtttggcaaattcaccatggaccttgttaac
agtgaaattgcagcttccacctccttgcccagttttagcactttcatggacggatacaccggagaatttgacgcctttctttaccagattccttcttcaa
atcagcagtcctcactgaaagtggaggaattccaggtttttggttgctacccaggttccttcacaaaccaactggacgaaaccatgtcctccagtggatc
agactattatggtagtccctgctctatcccatctccttcaaccccagggttccagaaccctcagctgcccacttgggagtgttcctatggtgcatactca
ccaactcagaactatgacaacatgcggcattggaccgagcaacagaaaagcagtatttcacagcagactttcttttcttttggcactccagctcacagcc
canacatggctgccaatcccatgaagatagctcctgcaacacacagacttgatcagcaagttgtggatgctgatgtttttgctttggcacagaactcttc
agcaggctttcctgctatcccctctggtcaggcacctggggtacttgacaactccgttttactggacagtcctttatctccttcaaaacacgnagtccca
gttctaatga
3' EST: CX815193
[+]acagcaaattttttattcaatatattaaatatatattaatcgggaaaaaaaccacatactgtaaatccagtaagatacacaaatataaatgtttcttttc
aaaaattacacatatttacacacagctcaaagggctgtgggaaccaaagtcacagctgaagagggcagctttgcatttcacagacctatttacaattttc
tcttagttctatgtacaagactttacaaactggctgtgattgtggtgggtccatcctttctgacctatttgggaacagttgcatttaaaggggtgagttt
ttgtagcaggacagacccaatctacagaagcagtgagaggaaggctgtttcagaaccagatgatctctgcaagtgtttcaataaaaaaacatgtttaaac
atgagacgattgaagaaagggggaaataatggaaaaagtcactttgagccaaaggcacatcggggttctctgtagtattaaaaataaagactcctagtaa
gatccagtagatcacactgcattgcaaatctgctggccaaggcaccgaatgtcaaaatatttgaatgttccaagagtttcctcttttcacttagagcatc
tctgggcccaaaggcaaaagcagagcagttttaaaagggtaaagtatccataaagatcttatccacaataggagggggaggcaccagatcttctagtttt
aagtaaaagatacgctgaagaccctgcgtacagagggtgcggagctctggaagtttccccagaagcttgnacaggcagntgggtctgttctgctcattca
tagaggaggggacatgctctttaaggcagntg
Library:
Description: PolyA+ RNA was primed with oligo-dT primer 5'-GACTAGTTCTAGATCGCGAG CGGCCGCCCTTTTTTTTTTTTTTT-3'. cDNA was ligated to SalI adapter (5'-TCGACCCACGCGTCCG-3' and 5'-CGGACGCGTGGG-3'), digested with NotI, size fractionated in 1.1% agarose gel electrophoresis and ligated into SalI and NotI digested pCMV-SPORT6 vector. Library contains the 1.5-2 kb size fraction (additional size fractions contained in the NIH_XGC_tropBrn2 and Brn4 libraries). Library constructed at the DOE Joint Genome Institute.Anatomy: brain | Stage: frog |
Normalized: No | Subtraction: No |
Vector Details | Vector Map |
Name: pCMV-SPORT6
Type: phagemid
5' Restriction Site: SalI
3' Restriction Site: NotI |  |
Usage:
Suppliers: