XB-CLONE-4354141
Clone Name: IMAGE:7026550
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Gene:
psma1
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Species: Xenopus tropicalis
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Sequence:
Full length sequence: BC081373
[+]
CGGGCAGCATTATTCAGCAGGAGTCGAGGTTCCGCTCAGCATGTTCCGCAATCAGTACGACAATGACGTTACCGTGTGGAGCCCTCAGGGCCGTATCCAT
CAGATTGAGTACGCAATGGAGGCCGTGAAGCAGGGATCTGCCACCGTCGGACTGAAGTCTAAATCTCAAGCTGTGCTGGTAGCGTTAAAGAGGGCACAGT
CAGAACTGGCGGCTCATCAGAAGAAAATTCTCAATGTGGACAATCACGTTGGTATTTCCATTGCCGGCCTCACCGCCGACGCCCGCCTCCTATGTAACTT
TATGCGGCAGGAGTGCCTGGACTCTCGCTTTGTGTTCGACCGCCCCCTGCCGGTGTCCCGACTGGTCTCCCAGATTGGCAGCAAAACCCAAATTCCAACT
CAGCGCTATGGGCGGAGACCATACGGCGTTGGGCTGCTCATCGCTGGATACGATGACATGGGACCCCACATTTTCCAGACCTCCCCCTCTGCAAATTACT
TTGACTGCAGAGCAATGTCCATCGGAGCGAGGTCTCAGTCGGCGCGCACCTACCTGGAGCGACACATGTCGGAGTTCCTAGACTGCAATCTGAACGATCT
GGTGAAACACGGGCTCCGCGCTCTGAGAGAAACCCTCCCGGCAGAGCAGGATCTCACCACTAAGAATGTCTCTATCGGCATCGTTGGGAAAGAAATGGAG
TTTACAATCTACGATGACGACGAGGTCGCCCCGTTTCTGGAGGGCTTGGAAGAAAGACCCCAGAGGAAGGTTGCGCCCCCTGCTGAAGAACCAGTAGAAA
AGCAGGAGGAGCCTATGGAGCACTAAACTGAAAGTGGATGAAGGCCCCGCCCTGAACCCGCCCCCGAGGACCCTATGCCACATTGCTCCCCCCAGCAGAT
CTTGCTTTACATACACAATACTATTCTGGAGAAATAAATCTGCTTATGGCATTTCCTGACATTTTGTATGATGATATTGTGATTATAATTGTAAAAGCGA
CGAAGAATAAAGGATTTTTTTTCCTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGAAAAAAAAAAAAAAA
5' EST: CF783175
[+]taattaatccccccccccccccgggcagcattattcagcaggagtcgaggttccgctcagcatgttccgcaatcagtacgacaatgacgttaccgtgtgg
agccctcagggccgtatccatcagattgagtacgcaatggaggccgtgaagcagggatctgccaccgtcggactgaagtctaaatctcaagctgtgctgg
tagcgttaaagagggcacagtcagaactggcggctcatcagaagaaaattctcaatgtggacaatcacgttggtatttccattgccggcctcaccgccga
cgcccgcctcctatgtaactttatgcggcaggagtgcctggactctcgctttgtgttcgaccgccccctgccggtgtcccgactggtctcccagattggc
agcaaaacccaaattccaactcagcgctatgggcggagaccatacggcgttgggctgctcatcgctggatacgatgacatgggaccccacattttccaga
cctccccctctgcaaattactttgactgcagagcaatgtccatcggagcgaggtctcagtcggcgcgcacctacctggagcgacacatgtcggagttcct
agactgcaatctgaacgatctggtgaaacacgggctccgcgctctgagagaaaccctcccgcagagcaagatctcaccacttaaaatgtctctatcggca
tcgtttgggaaaaaaaaggagtttaaaatcttaccatgaccaacaagtcccccccttttttggaagggcttgggaaaaaaaaacccctgaaggaaaggtt
gcgcccccctgctttgaaaaaaccggtataaaaaaaccgggagggaacgcctttgggagaccactaaaacttgaaaaagtgggaatataaaaggcccccc
accccttaaaaacccgccca
3' EST: CF783174
[+]ttttttttttttttcttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttggaaaagaa
aaaaaaccccttattcccccccccctttttcaaataaaaacccaaaaacccccaaaaaaaagtccgggaaaagcccaaaaccaaaatttttctcccccaa
aaaaaaatatgggggggggaaaaaccaaattctcctgggggggaaaaaaaaggggggaaaaagggcccccccggggggggggggttaagggggggggggc
ccttttaaccccatttttaaattttaaaggggccccccaaaaaagccccccccccgggggtttttttcaaaaaggggggttcccccccccaagggggggg
ggcgaaaaaaaaattttttttggggggggggggttttttttttttttaaaaaaaccccccccccaaaaaaaaaaaaggggggggaaaaacccccccnggg
ttttttttaaaaaaaatggaaaaaacccccccttttttttttcccctcccaaaaaaggccccaaaaaaaaaaaaaaacactcctttaggggggggggaaa
aaaacccccccccccccccccccccgccggaagagggatttttttcctcccccccaaaaaaaagggcggggaaacccccccccgctttttttttccccac
cccacaaaaaaaatttttttaaaaaaaaaaaaagagggggccccccccgaaaagaaaaacacaccccccccaccaagccgggggggggggggcccccccc
acca
Library:
Description: 10 ug of polyA+ RNA was isolated from a mixture of embryos at stage 10, 20 and 30 and primed by oligo-dT primer: 5'-GAGAGAGAGAAGGATCC(T)16VN-3' (where V=G,A,C). 5-methyl-dCTP was used instead of dCTP in the first-strand synthesis in order to get hemimethylated cDNA. After full-length enrichment, oligo-dG tailing and normalization against itself, second-strand synthesis was carried out by priming with 5'-GAGAGAGAGACTCGAGTTAATTAAT(C)13-3'. dsDNA was digested with XhoI/BamHI and directionally cloned into the pRKW2 vector. Average insert size is 1.5 kb. Library constructed using the Carninci protocol (Genome Research 2000) by Drs. W. Wu and C. Niehrs (DKFZ, Heidelberg, Germany). Vector Details | Vector Map |
Name: pRKW2
Type: phagemid
5' Restriction Site: XhoI
3' Restriction Site: BamHI |  |
Usage:
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