XB-CLONE-4354577
Clone Name: IMAGE:7026753
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Gene:
vmp1
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Species: Xenopus tropicalis
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Sequence:
Full length sequence: BC080142
[+]
GGGTTAGTGTGACAGCTAGAGAGCAGAGAAGCCGACTTGGAGGTGAGGTATCGGCAACGAGAATCGAAGAAGAGAGTCACAAGACAAGGTGGCATAGGAA
ATGGCAGAGAATGGCACTGATTGTGAACAGAGGCGTGTTGGAATGGCTAAAGAACAAAACAATGGAAGCTTTCAAGACCCCTCCTTTTTGAGTGATAGGA
AGAGCAGGGACAGAGAAGAAAGACAAAGTATTGTTCTCTGGAGAAAACCACTAATTACCTTACAGTATTTTATTCTCGAAGTCCTAATAACCTTGAAGGA
TTGGAGCATAAGATTATGGCACCGTCGGATGATGGTGGTGTCTGTTTTATTGCTGCTTGCAGTTCTTTCAGTAGTGTATTATATAGAAGGAACACATCAA
CAGTATGTGCAGTATGTTGAGAAAAAATGTTTATGGTGTGCCTACTGGGTAGGCTTAGGAATACTGTCCTCGGTTGGACTCGGAACAGGTCTTCATACCT
TTCTACTTTATTTGGGTCCGCATATCGCCTCTGTGACCATTGCTGCTTATGAATGTAACTCAGTAAATTTCCCAGAGCCACCTTATCCTGATGAAATTAT
ATGTCCAGATGAAGAAGGCACAGAAGGAGCCATTTCCCTTTGGACAATAATATCAAAAGTGAGGCTGGAAGCATGTATGTGGGGAGCTGGCACAGCCATT
GGAGAATTACCTCCATATTTTATGGCCAGAGCAGCTCGGCTTTCCGGAGTAGAAACAGATGATGAAGAATATGCAGAATTTGAAGAAATGCTTGAACATG
CCCAGACTGCACAGGACTTCGCAACACGTGCAAAATTAGCTGTTCAGAATCTTGTACAGAAAGTTGGATTTTTGGGGATCTTGGCTTGCGCCTCTATTCC
CAACCCCCTATTTGATCTGGCAGGAATTACATGCGGACACTTTCTCGTCCCTTTCTGGACTTTCTTTGGCGCTACCCTGATAGGCAAAGCCATCATAAAA
ATGCACATTCAGAAGCTCTTTGTTATCATAACGTTCAGCAAGCACATTGTGGAGCAGATGGTGTCCCTAATCGGGGTTATTCCAAGCATCGGTCCGTCTC
TACAGAAACCCTTTCAGGAATATCTGGAAGCTCAGCGGAAAAAACTGCATCATAAAGAAGACAGCGGAGCCCCTCAGAGTGAGAACTGGCTATCGTGGGC
GTTTGAGAAGCTGGTGATCATTATGGTTTTCTATTTCATTCTGTCCATCATCAACTCCATGGCACAGAGCTATGCCAAACGGGTGCAACAGAGAAAGTTA
TCTGTAGAGAAGACTAAGTAAAGGGATTACACCCAGGGGATTGGGAAGCAAGGGAGGGGGGTGGTAAAGGGGATAAAAGATGATGCTTCTAAGTGGAACT
TCAACTGACATGATTAACTGTTAAATACAAATTACTGAATCTGGAACACATTTAAAAAAAGAACATTATTTGTTACAAGTTATTTTTGATTTTTTTTCAC
AATATAAAAATCAATTGATGTTCAGAGATGTCTATGTGGAAAAGTGAGACACACCATTTTCATGGCCTATTTTTCCTATGGCACGTTTTCCCTAACAGTT
CAAATTCTCCCTTAAAGCTTTGAATAACAGAAAGGTTTGCAAACCTTTTTTTTTTCTCCACTTAAGGGGCAAACTTATTGGGTACTATAATGACGAACTA
GGGCAATGCAGAGCATTGGTCTCTAGACCCCTTCAGATTTTAAAGAAAAATGAAGCTGAAAAATGAAGTTAAAATACTAAACCATTGCAGATATTTCTGT
CTTATTGGAACTGGATGTGCTCCTTTCATGTCTGTAACTTTATTCTGGAAGGCTACATTGGTGGATTGCTGTGCAGTCTGTTGTGCCTCCATCCAGATCT
CTTAATACGTTTATAATGTTTGTGGAACTTCAGAAACAAAGACTAATTACTTTTCCCAGTGTCTTAAGTATCAGTTTCCTGGCCTATACTTGTACATGAA
TATAACTAGAGGCTTTCACTGCATTTGGATATATTCTGGGTAATTTGGCTATGACCTAACACAAGGCAGACGCCCTGCTGGTATATTTGTATGTGAAGAG
CCAACAGGCGTTTTAATCACCTTATGTGAAATACAGCAGATTTGGCAAGAACTGGTGCATATTGGGTTATTCTCTCTTGTAAGGGGATGCCAGCATTGGA
AGGGAATAGTAATCAGTGATGTCACTTCTTTTTACTGAAACCATCACACAAGGTTGGTACCTGTCCAATTCTGTAAGAATGACATTGTTTTTTTTTGTTT
TTTTTATATTCTGTACATATAGAATGGAAAGCTGAAACTGAACTTTATAAAAGCCACCTTTGATCATTCGAAAAAAAAAAAAAAAA
5' EST: CF782906
[+]taattaatcccccccccccccgggttagtgtgacagctagagagcagagaagccgacttggaggtgaggtatcggcaacgagaatcgaagaagagagtca
caagacaaggtggcataggaaatggcagagaatggcactgattgtgaacagaggcgtgttggaatggctaaagaacaaaacaatggaagctttcaagacc
cctcctttttgagtgataggaagagcagggacagagaagaaagacaaagtattgttctctggagaaaaccactaattaccttacagtattttattctcga
agtcctaataaccttgaaggattggagcataagattatggcaccgtcggatgatggtggtgtctgttttattgctgcttgcagttctttcagtagtgtat
tatatagaaggaacacatcaacagtatgtgcagtatgttgagaaaaaatgtttatggtgtgcctactgggtaggcttaggaatactgtcctcggttggac
tcggaacaggtcttcatacctttctactttatttgggtccgcatatcgcctctgtgaccattgctgcttatgaatgtaactcagtaaatttcccagagcc
accttatcctgatgaaattatatgtccagatgaagaaggcacagaaggagcccatttcccctttggaccaataatatcaaaaagtggaggctgggaacca
tggtatggtgggggagcttgggcacagcccatttggaagaaattacctcccttaattttatgggcccagaaccagcctcgggcttttcccgggagttaga
aacccggtatgattgaaaggaaatttggccggaaatttttggaaaaaaaatggcgttgtaaacaatgccccccagaaatggtgacacaggaaactttccg
ccaaaacaccgtgggcaaaaaattataaacccggggc
3' EST: CF782905
[+]tttttttttttttttcgaatgatcaaaggtggcttttataaagttcagtttcagctttccattctatatgtacagaatataaaaaaaacaaaaaaaaaca
atgtcattcttacagaattggacaggtaccaaccttgtgtgatggtttcagtaaaaagaagtgacatcactgattactattcccttccaatgctggcatc
cccttacaagagagaataacccaatatgcaccagttcttgccaaatctgctgtatttcacataaggtgattaaaacgcctgttggctcttcacatacaaa
tataccagcagggcgtctgccttgtgttaggtcatagccaaattacccagaatatatccaaatgcagtgaaagcctctagttatattcatgtacaagtat
aggccaggaaactgatacttaagacactgggaaaagtaattagtctttgtttctgaagttccacaaacattataaacgtattaagagatctggatggagg
cacaacagactgcacagcaatccaccaatgtagccttccagaataaagttacagacatgaaaggagcacatccagttccaataagacagaaatatctgca
atggtttagtattttaacttcatttttcagcttcatttttctttaaaatctgaaggggtctagagaccaatgctctgcattgccctagttcgtcattata
gtacccaataagtttgcccccttaagtggagaaaaaaaaaaggtttggcaaaccttttctgttattccacagcttttaggggagaaattttgaactggtt
aagggaaaaactc
Library:
Description: 10 ug of polyA+ RNA was isolated from a mixture of embryos at stage 10, 20 and 30 and primed by oligo-dT primer: 5'-GAGAGAGAGAAGGATCC(T)16VN-3' (where V=G,A,C). 5-methyl-dCTP was used instead of dCTP in the first-strand synthesis in order to get hemimethylated cDNA. After full-length enrichment, oligo-dG tailing and normalization against itself, second-strand synthesis was carried out by priming with 5'-GAGAGAGAGACTCGAGTTAATTAAT(C)13-3'. dsDNA was digested with XhoI/BamHI and directionally cloned into the pRKW2 vector. Average insert size is 1.5 kb. Library constructed using the Carninci protocol (Genome Research 2000) by Drs. W. Wu and C. Niehrs (DKFZ, Heidelberg, Germany). Vector Details | Vector Map |
Name: pRKW2
Type: phagemid
5' Restriction Site: XhoI
3' Restriction Site: BamHI |  |
Usage:
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