Return to search results Title: Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes

Summary

RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the discovery of a group of novel animally enriched RNAs, this study revealed a surprisingly low conservation of vegetal RNA localization between the two frog species.

Contributors: Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler

Experiment Type: mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.

Article: XB-ART-51224, PubMed

Source: NCBI GEO, Xenbase Download

Sample	View		GSMs	Assay Type
animal oocyte - oocyte VI GSM1410605  GSM1410606  RNA-Seq Xtr   [-] [+] Background: Xtr.Outbred Conditions: Tissue Assay Stages ChIP Antibody animal oocyte stage VI   oocyte oocyte stage VI   vegetal oocyte - oocyte VI GSM1410607  GSM1410608  RNA-Seq Xtr   [-] [+] Background: Xtr.Outbred Conditions: Tissue Assay Stages ChIP Antibody oocyte oocyte stage VI   vegetal oocyte stage VI   animal oocyte - oocyte VI GSM1410597  GSM1410598  GSM1410599  GSM1410600  RNA-Seq Xla   [-] [+] Background: Xla.Outbred Conditions: Tissue Assay Stages ChIP Antibody animal oocyte stage VI   oocyte oocyte stage VI   vegetal oocyte - oocyte VI GSM1410601  GSM1410602  GSM1410603  GSM1410604  RNA-Seq Xla   [-] [+] Background: Xla.Outbred Conditions: Tissue Assay Stages ChIP Antibody oocyte oocyte stage VI   vegetal oocyte stage VI

Select All  Xtr    Xla

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