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Xenopus laevis and Xenopus tropicalis have long been used to drive discovery in developmental, cell, and molecular biology. These dual frog species boast experimental strengths for embryology including large egg sizes that develop externally, well-defined fate maps, and cell-intrinsic sources of nutrients that allow explanted tissues to grow in culture. Development of the Xenopus cell extract system has been used to study cell cycle and DNA replication. Xenopus tadpoletail and limb regeneration have provided fundamental insights into the underlying mechanisms of this processes, and the loss of regenerative competency in adults adds a complexity to the system that can be more directly compared to humans. Moreover, Xenopus genetics and especially disease-causing mutations are highly conserved with humans, making them a tractable system to model human disease. In the last several years, genome editing, expanding genomic resources, and intersectional approaches leveraging the distinct characteristics of each species have generated new frontiers in cell biology. While Xenopus have enduringly represented a leading embryological model, new technologies are generating exciting diversity in the range of discoveries being made in areas from genomics and proteomics to regenerative biology, neurobiology, cell scaling, and human disease modeling.
Figure 1
In this figure, we present a staging series for embryonic Xenopus tropicalis. Stages were broken into four major modules: cleavage, gastrulation, neurulation, and tailbud stages. Both animal and lateral views are shown to highlight the appearance of animal blastomeres as well as the pigment distinctions between animal and vegetal blastomeres. Gastrulation is shown as a continuum from stages 9 to 12.5. Neurulation comprises stages 13 to 18, and staging of this process is primarily predicted from lateral proximity of neural folds to one another in the dorsal view and closure of neural folds in the anterior view. When the neural fold finishes zippering, the embryo begins to elongate. During early tailbud stages (19â24) the embryo develops morphologically wellâdefined anterior structures including the pharyngeal arches, sensory placodes, and eyecup, while elongating along the anteriorâposterior axis. Elongation, development of tailfin, resecting of gut, and development of refined organs then takes place over the rest of tailbud and early tadpole development. The lateral view is best used for staging by looking at the gut morphology, eye morphology, and body elongation. The dorsal view is best used to look at development of arches and elongation
Akkers,
Chromatin immunoprecipitation analysis of Xenopus embryos.
2012, Pubmed,
Xenbase
Akkers,
Chromatin immunoprecipitation analysis of Xenopus embryos.
2012,
Pubmed
,
Xenbase
Akkers,
A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos.
2009,
Pubmed
,
Xenbase
Angerilli,
The Xenopus animal cap transcriptome: building a mucociliary epithelium.
2018,
Pubmed
,
Xenbase
Arbach,
Extreme nuclear branching in healthy epidermal cells of the Xenopus tail fin.
2018,
Pubmed
,
Xenbase
Bhattacharya,
CRISPR/Cas9: An inexpensive, efficient loss of function tool to screen human disease genes in Xenopus.
2015,
Pubmed
,
Xenbase
Blitz,
Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system.
2013,
Pubmed
,
Xenbase
Blitz,
Leapfrogging: primordial germ cell transplantation permits recovery of CRISPR/Cas9-induced mutations in essential genes.
2016,
Pubmed
,
Xenbase
Bogdanović,
Active DNA demethylation at enhancers during the vertebrate phylotypic period.
2016,
Pubmed
,
Xenbase
Briggs,
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution.
2018,
Pubmed
,
Xenbase
Bright,
Assay for Transposase-Accessible Chromatin-Sequencing Using Xenopus Embryos.
2019,
Pubmed
,
Xenbase
Brown,
Xenopus tropicalis egg extracts provide insight into scaling of the mitotic spindle.
2007,
Pubmed
,
Xenbase
Chang,
Transcriptional dynamics of tail regeneration in Xenopus tropicalis.
2017,
Pubmed
,
Xenbase
Charney,
Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program.
2017,
Pubmed
,
Xenbase
Deniz,
CRISPR/Cas9 F0 Screening of Congenital Heart Disease Genes in Xenopus tropicalis.
2018,
Pubmed
,
Xenbase
Duncan,
Xenopus as a model organism for birth defects-Congenital heart disease and heterotaxy.
2016,
Pubmed
,
Xenbase
Edens,
PKC-mediated phosphorylation of nuclear lamins at a single serine residue regulates interphase nuclear size in Xenopus and mammalian cells.
2017,
Pubmed
,
Xenbase
Forouzmand,
Developmentally regulated long non-coding RNAs in Xenopus tropicalis.
2017,
Pubmed
,
Xenbase
Gibeaux,
Generation of Xenopus Haploid, Triploid, and Hybrid Embryos.
2019,
Pubmed
,
Xenbase
Gibeaux,
Paternal chromosome loss and metabolic crisis contribute to hybrid inviability in Xenopus.
2018,
Pubmed
,
Xenbase
Good,
Cytoplasmic volume modulates spindle size during embryogenesis.
2013,
Pubmed
,
Xenbase
Grainger,
Xenopus tropicalis as a model organism for genetics and genomics: past, present, and future.
2012,
Pubmed
,
Xenbase
Gupta,
Developmental enhancers are marked independently of zygotic Nodal signals in Xenopus.
2014,
Pubmed
,
Xenbase
Hellsten,
The genome of the Western clawed frog Xenopus tropicalis.
2010,
Pubmed
,
Xenbase
Horb,
Xenopus Resources: Transgenic, Inbred and Mutant Animals, Training Opportunities, and Web-Based Support.
2019,
Pubmed
,
Xenbase
Jevtić,
Nuclear size scaling during Xenopus early development contributes to midblastula transition timing.
2015,
Pubmed
,
Xenbase
Jevtić,
Concentration-dependent Effects of Nuclear Lamins on Nuclear Size in Xenopus and Mammalian Cells.
2015,
Pubmed
,
Xenbase
Khokha,
Techniques and probes for the study of Xenopus tropicalis development.
2002,
Pubmed
,
Xenbase
Lei,
Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs).
2012,
Pubmed
,
Xenbase
Levy,
Nuclear size is regulated by importin α and Ntf2 in Xenopus.
2010,
Pubmed
,
Xenbase
Liu,
Efficient genome editing of genes involved in neural crest development using the CRISPR/Cas9 system in Xenopus embryos.
2016,
Pubmed
,
Xenbase
Mitros,
A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis.
2019,
Pubmed
,
Xenbase
Naert,
TALENs and CRISPR/Cas9 fuel genetically engineered clinically relevant Xenopus tropicalis tumor models.
2017,
Pubmed
,
Xenbase
Nakade,
Microhomology-mediated end-joining-dependent integration of donor DNA in cells and animals using TALENs and CRISPR/Cas9.
2014,
Pubmed
,
Xenbase
Narbonne,
Deficient induction response in a Xenopus nucleocytoplasmic hybrid.
2011,
Pubmed
,
Xenbase
Nenni,
Xenbase: Facilitating the Use of Xenopus to Model Human Disease.
2019,
Pubmed
,
Xenbase
Onjiko,
Single-cell mass spectrometry reveals small molecules that affect cell fates in the 16-cell embryo.
2015,
Pubmed
,
Xenbase
Predrag,
ELUCIDATING NUCLEAR SIZE CONTROL IN THE XENOPUS MODEL SYSTEM.
2018,
Pubmed
,
Xenbase
Session,
Genome evolution in the allotetraploid frog Xenopus laevis.
2016,
Pubmed
,
Xenbase
Shi,
Targeted integration of genes in Xenopus tropicalis.
2017,
Pubmed
,
Xenbase
Shi,
Modeling human point mutation diseases in Xenopus tropicalis with a modified CRISPR/Cas9 system.
2019,
Pubmed
,
Xenbase
Shi,
Heritable CRISPR/Cas9-mediated targeted integration in Xenopus tropicalis.
2015,
Pubmed
,
Xenbase
Tan,
RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development.
2013,
Pubmed
,
Xenbase
Tandon,
Expanding the genetic toolkit in Xenopus: Approaches and opportunities for human disease modeling.
2017,
Pubmed
,
Xenbase
van Heeringen,
Principles of nucleation of H3K27 methylation during embryonic development.
2014,
Pubmed
,
Xenbase
Vuković,
Nuclear size is sensitive to NTF2 protein levels in a manner dependent on Ran binding.
2016,
Pubmed
,
Xenbase
Wilbur,
Mitotic spindle scaling during Xenopus development by kif2a and importin α.
2013,
Pubmed
,
Xenbase
Wills,
Chromatin immunoprecipitation and deep sequencing in Xenopus tropicalis and Xenopus laevis.
2014,
Pubmed
,
Xenbase
Willsey,
Katanin-like protein Katnal2 is required for ciliogenesis and brain development in Xenopus embryos.
2018,
Pubmed
,
Xenbase
Wühr,
Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database.
2014,
Pubmed
,
Xenbase
Wühr,
The Nuclear Proteome of a Vertebrate.
2015,
Pubmed
,
Xenbase
Zahn,
The Zahn drawings: new illustrations of Xenopus embryo and tadpole stages for studies of craniofacial development.
2017,
Pubmed
,
Xenbase