XB-ART-50704
Cell Biosci
2014 Nov 28;4:73. doi: 10.1186/2045-3701-4-73.
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Epigenetic regulation of thyroid hormone-induced adult intestinal stem cell development during anuran metamorphosis.
Sun G
,
Fu L
.
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Epigenetic modifications of histones are emerging as key factors in gene regulation by diverse transcription factors. Their roles during vertebrate development and pathogenesis are less clear. The causative effect of thyroid hormone (T3) on amphibian metamorphosis and the ability to manipulate this process for molecular and genetic studies have led to the demonstration that T3 receptor (TR) is necessary and sufficient for Xenopus metamorphosis, a process that resembles the postembryonic development (around birth) in mammals. Importantly, analyses during metamorphosis have provided some of the first in vivo evidence for the involvement of histone modifications in gene regulation by TR during vertebrate development. Furthermore, expression and functional studies suggest that various histone modifying epigenetic enzymes likely participate in multiple steps during the formation of adult intestinal stem cells during metamorphosis. The similarity between intestinal remodeling and the maturation of the mammalian intestine around birth when T3 levels are high suggests conserved roles for the epigenetic enzymes in mammalian adult intestinal stem cell development and/or proliferation.
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Species referenced: Xenopus laevis
Genes referenced: dot1l hdac3 ncor1 prmt1
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Figure 1. T3-dependent intestinal remodeling during Xenopus metamorphosis involves larval cell apoptosis and de novo formation of adult epithelial stem cells. Xenopus undergoes a biphasic development. Its embryogenesis, when there is little TR or T3, leads to the formation of a free-living premetamorphic tadpoles by stage 45. During premetamorphosis (stage 45â54), there are high levels of TR but little T3, and the intestine has a simple structure with only a single fold, the typhlosole. During metamorphosis, the T3 level in the plasma rises to peak around stage 62, and most larval epithelial cells in the intestine undergo apoptosis, as indicated by the circles. Concurrently, the proliferating adult progenitor/stem cells are formed de novo from larval epithelial cells through dedifferentiation, as indicated by black dots. By the end of metamorphosis (stage 66), the levels of both TR and T3 drop lower and the newly differentiated adult epithelial cells in the intestine form a multiply folded epithelium. | |
Figure 2. Upregulation of genes involved in epigenetic modifications during intestinal stem cell development. (A) HDAC activity. Intestinal protein extracts were prepared from Xenopus laevis tadpoles at different stages and assayed for HDAC activity in the presence or absence of 10 nM TSA, an HDAC inhibitor. Means +/- SEMs are given. Statistical significance as compared with the stage 54 animals is expressed as *: P <0.01. Note that the HDAC-specific drug TSA inhibited all activities. See [91] for details. (B)-(D). The relative mRNA levels of N-CoR (B), PRMT1 (C), and Dot1L (D). The mRNA levels were determined by using total RNA from intestine at different stages during Xenopus laevis development. See [76, 87, 98] for details. | |
Figure 3. TSA induces direct TR target genes but blocks the regulation of late T 3 -response genes in premetamorphic tadpole intestine. Stage 55 tadpoles were treated with T3 (5 nM) and/or TSA (100 nM) for the indicated number of days. Total RNA was extracted from isolated intestine and assayed by PCR for the mRNA levels of indicated genes. IFAPB: intestinal fatty acid binding protein. See [91] for details. |
References [+] :
, , Pubmed , Xenbase
, , Pubmed , Xenbase
, , Pubmed
, , Pubmed
Bagamasbad, A role for basic transcription element-binding protein 1 (BTEB1) in the autoinduction of thyroid hormone receptor beta. 2008, Pubmed , Xenbase
Barski, High-resolution profiling of histone methylations in the human genome. 2007, Pubmed
Barth, Fast signals and slow marks: the dynamics of histone modifications. 2010, Pubmed
Bilesimo, Specific histone lysine 4 methylation patterns define TR-binding capacity and differentiate direct T3 responses. 2011, Pubmed , Xenbase
Brown, Amphibian metamorphosis. 2007, Pubmed , Xenbase
Buchholz, Transgenic analysis reveals that thyroid hormone receptor is sufficient to mediate the thyroid hormone signal in frog metamorphosis. 2004, Pubmed , Xenbase
Buchholz, Molecular and developmental analyses of thyroid hormone receptor function in Xenopus laevis, the African clawed frog. 2006, Pubmed , Xenbase
Buchholz, A dominant-negative thyroid hormone receptor blocks amphibian metamorphosis by retaining corepressors at target genes. 2003, Pubmed , Xenbase
Bulynko, Nuclear receptor coactivators: structural and functional biochemistry. 2011, Pubmed
Burke, Co-repressors 2000. 2000, Pubmed
Cao, Role of histone H3 lysine 27 methylation in Polycomb-group silencing. 2002, Pubmed
Cao, The functions of E(Z)/EZH2-mediated methylation of lysine 27 in histone H3. 2004, Pubmed
Chen, A transcriptional co-repressor that interacts with nuclear hormone receptors. 1995, Pubmed
Chen, Nuclear receptor coactivator ACTR is a novel histone acetyltransferase and forms a multimeric activation complex with P/CAF and CBP/p300. 1997, Pubmed
Chen, Regulation of transcription by a protein methyltransferase. 1999, Pubmed
Demarest, Mutual synergistic folding in recruitment of CBP/p300 by p160 nuclear receptor coactivators. 2002, Pubmed
Denver, Thyroid hormone receptor subtype specificity for hormone-dependent neurogenesis in Xenopus laevis. 2009, Pubmed , Xenbase
Fu, Novel double promoter approach for identification of transgenic animals: A tool for in vivo analysis of gene function and development of gene-based therapies. 2002, Pubmed , Xenbase
Fujimoto, Thyroid hormone activates protein arginine methyltransferase 1 expression by directly inducing c-Myc transcription during Xenopus intestinal stem cell development. 2012, Pubmed , Xenbase
Glass, The coregulator exchange in transcriptional functions of nuclear receptors. 2000, Pubmed
Grimaldi, Mechanisms of thyroid hormone receptor action during development: lessons from amphibian studies. 2013, Pubmed , Xenbase
Gu, Histone H3 lysine 4 methyltransferases and demethylases in self-renewal and differentiation of stem cells. 2013, Pubmed
Guenther, A core SMRT corepressor complex containing HDAC3 and TBL1, a WD40-repeat protein linked to deafness. 2000, Pubmed
Guenther, The SMRT and N-CoR corepressors are activating cofactors for histone deacetylase 3. 2001, Pubmed
Hasebe, Epithelial-connective tissue interactions induced by thyroid hormone receptor are essential for adult stem cell development in the Xenopus laevis intestine. 2011, Pubmed , Xenbase
Hasebe, Thyroid hormone-induced cell-cell interactions are required for the development of adult intestinal stem cells. 2013, Pubmed , Xenbase
Havis, Metamorphic T3-response genes have specific co-regulator requirements. 2003, Pubmed , Xenbase
Heimeier, Participation of Brahma-related gene 1 (BRG1)-associated factor 57 and BRG1-containing chromatin remodeling complexes in thyroid hormone-dependent gene activation during vertebrate development. 2008, Pubmed , Xenbase
Hörlein, Ligand-independent repression by the thyroid hormone receptor mediated by a nuclear receptor co-repressor. 1995, Pubmed
Hsia, Chromatin disruption and histone acetylation in regulation of the human immunodeficiency virus type 1 long terminal repeat by thyroid hormone receptor. 2002, Pubmed , Xenbase
Huang, A role for cofactor-cofactor and cofactor-histone interactions in targeting p300, SWI/SNF and Mediator for transcription. 2003, Pubmed , Xenbase
Huang, Thematic series: Epigenetics in stem cells and cancer. 2013, Pubmed
Ishizuka, The N-CoR/histone deacetylase 3 complex is required for repression by thyroid hormone receptor. 2003, Pubmed
Ishizuya-Oka, Origin of the adult intestinal stem cells induced by thyroid hormone in Xenopus laevis. 2009, Pubmed , Xenbase
Ishizuya-Oka, Thyroid hormone-induced expression of sonic hedgehog correlates with adult epithelial development during remodeling of the Xenopus stomach and intestine. 2001, Pubmed , Xenbase
Ishizuya-Oka, Establishment of intestinal stem cell niche during amphibian metamorphosis. 2013, Pubmed , Xenbase
Ishizuya-Oka, Evolutionary insights into postembryonic development of adult intestinal stem cells. 2011, Pubmed
Ishizuya-Oka, Connective tissue is involved in adult epithelial development of the small intestine during anuran metamorphosis in vitro. 1992, Pubmed
Ito, The TRAP/SMCC/Mediator complex and thyroid hormone receptor function. 2001, Pubmed
Jones, N-CoR-HDAC corepressor complexes: roles in transcriptional regulation by nuclear hormone receptors. 2003, Pubmed , Xenbase
Koh, Synergistic enhancement of nuclear receptor function by p160 coactivators and two coactivators with protein methyltransferase activities. 2001, Pubmed
Kouzarides, Chromatin modifications and their function. 2007, Pubmed
Kroll, Transgenic Xenopus embryos from sperm nuclear transplantations reveal FGF signaling requirements during gastrulation. 1996, Pubmed , Xenbase
Lazar, Thyroid hormone receptors: multiple forms, multiple possibilities. 1993, Pubmed
Lei, Generation of gene disruptions by transcription activator-like effector nucleases (TALENs) in Xenopus tropicalis embryos. 2013, Pubmed , Xenbase
Lei, Efficient targeted gene disruption in Xenopus embryos using engineered transcription activator-like effector nucleases (TALENs). 2012, Pubmed , Xenbase
Li, p300 requires its histone acetyltransferase activity and SRC-1 interaction domain to facilitate thyroid hormone receptor activation in chromatin. 2000, Pubmed , Xenbase
Li, Involvement of histone methylation and phosphorylation in regulation of transcription by thyroid hormone receptor. 2002, Pubmed , Xenbase
Li, The role of chromatin during transcription. 2007, Pubmed
Li, Both corepressor proteins SMRT and N-CoR exist in large protein complexes containing HDAC3. 2000, Pubmed , Xenbase
Luu, Differential regulation of two histidine ammonia-lyase genes during Xenopus development implicates distinct functions during thyroid hormone-induced formation of adult stem cells. 2013, Pubmed , Xenbase
MACDONALD, CELL PROLIFERATION AND MIGRATION IN THE STOMACH, DUODENUM, AND RECTUM OF MAN: RADIOAUTOGRAPHIC STUDIES. 1964, Pubmed
Mangelsdorf, The nuclear receptor superfamily: the second decade. 1995, Pubmed
Matsuda, An essential and evolutionarily conserved role of protein arginine methyltransferase 1 for adult intestinal stem cells during postembryonic development. 2010, Pubmed , Xenbase
Matsuda, Contrasting effects of two alternative splicing forms of coactivator-associated arginine methyltransferase 1 on thyroid hormone receptor-mediated transcription in Xenopus laevis. 2007, Pubmed , Xenbase
Matsuda, Novel functions of protein arginine methyltransferase 1 in thyroid hormone receptor-mediated transcription and in the regulation of metamorphic rate in Xenopus laevis. 2009, Pubmed , Xenbase
Matsuura, Histone H3K79 methyltransferase Dot1L is directly activated by thyroid hormone receptor during Xenopus metamorphosis. 2012, Pubmed , Xenbase
Matsuura, Liganded thyroid hormone receptor induces nucleosome removal and histone modifications to activate transcription during larval intestinal cell death and adult stem cell development. 2012, Pubmed , Xenbase
Maunakea, Epigenome mapping in normal and disease States. 2010, Pubmed
McKenna, Nuclear receptors, coregulators, ligands, and selective receptor modulators: making sense of the patchwork quilt. 2001, Pubmed
McKenna, Minireview: Evolution of NURSA, the Nuclear Receptor Signaling Atlas. 2009, Pubmed
Miller, Tissue-specific upregulation of MDS/EVI gene transcripts in the intestine by thyroid hormone during Xenopus metamorphosis. 2013, Pubmed , Xenbase
Nakajima, Dual mechanisms governing muscle cell death in tadpole tail during amphibian metamorphosis. 2003, Pubmed , Xenbase
Nguyen, The diverse functions of Dot1 and H3K79 methylation. 2011, Pubmed
O'Malley, Minireview: nuclear receptor and coregulator proteomics--2012 and beyond. 2012, Pubmed
Oñate, Sequence and characterization of a coactivator for the steroid hormone receptor superfamily. 1995, Pubmed
Paul, SRC-p300 coactivator complex is required for thyroid hormone-induced amphibian metamorphosis. 2007, Pubmed , Xenbase
Paul, Coactivator recruitment is essential for liganded thyroid hormone receptor to initiate amphibian metamorphosis. 2005, Pubmed , Xenbase
Paul, Tissue- and gene-specific recruitment of steroid receptor coactivator-3 by thyroid hormone receptor during development. 2005, Pubmed , Xenbase
Paul, Distinct expression profiles of transcriptional coactivators for thyroid hormone receptors during Xenopus laevis metamorphosis. 2003, Pubmed , Xenbase
Perissi, Deconstructing repression: evolving models of co-repressor action. 2010, Pubmed
Roh, The genomic landscape of histone modifications in human T cells. 2006, Pubmed
Sachs, Dual functions of thyroid hormone receptors during Xenopus development. 2000, Pubmed , Xenbase
Sachs, Targeted chromatin binding and histone acetylation in vivo by thyroid hormone receptor during amphibian development. 2000, Pubmed , Xenbase
Sachs, Nuclear receptor corepressor recruitment by unliganded thyroid hormone receptor in gene repression during Xenopus laevis development. 2002, Pubmed , Xenbase
Sachs, An essential role of histone deacetylases in postembryonic organ transformations in Xenopus laevis. 2001, Pubmed , Xenbase
Sachs, Involvement of histone deacetylase at two distinct steps in gene regulation during intestinal development in Xenopus laevis. 2001, Pubmed , Xenbase
Sato, A role of unliganded thyroid hormone receptor in postembryonic development in Xenopus laevis. 2007, Pubmed , Xenbase
Schreiber, Remodeling of the intestine during metamorphosis of Xenopus laevis. 2005, Pubmed , Xenbase
Schreiber, Cell-cell interactions during remodeling of the intestine at metamorphosis in Xenopus laevis. 2009, Pubmed , Xenbase
Schreiber, Diverse developmental programs of Xenopus laevis metamorphosis are inhibited by a dominant negative thyroid hormone receptor. 2001, Pubmed , Xenbase
Shi, Biphasic intestinal development in amphibians: embryogenesis and remodeling during metamorphosis. 1996, Pubmed , Xenbase
Shi, Molecular biology of amphibian metamorphosis A new approach to an old problem. 1994, Pubmed
Shi, The development of the adult intestinal stem cells: Insights from studies on thyroid hormone-dependent amphibian metamorphosis. 2011, Pubmed , Xenbase
Shi, Dual functions of thyroid hormone receptors in vertebrate development: the roles of histone-modifying cofactor complexes. 2009, Pubmed , Xenbase
Shi, Unliganded thyroid hormone receptor regulates metamorphic timing via the recruitment of histone deacetylase complexes. 2013, Pubmed , Xenbase
Shi, Thyroid hormone receptor actions on transcription in amphibia: The roles of histone modification and chromatin disruption. 2012, Pubmed
Sterling, Cytological and morphological analyses reveal distinct features of intestinal development during Xenopus tropicalis metamorphosis. 2012, Pubmed , Xenbase
Stewart, Relationship between histone H3 lysine 9 methylation, transcription repression, and heterochromatin protein 1 recruitment. 2005, Pubmed
Sun, Thyroid hormone regulation of adult intestinal stem cell development: mechanisms and evolutionary conservations. 2012, Pubmed , Xenbase
Sun, Spatio-temporal expression profile of stem cell-associated gene LGR5 in the intestine during thyroid hormone-dependent metamorphosis in Xenopus laevis. 2010, Pubmed , Xenbase
Sun, Activation of Sox3 gene by thyroid hormone in the developing adult intestinal stem cell during Xenopus metamorphosis. 2014, Pubmed , Xenbase
Sun, Expression profiling of intestinal tissues implicates tissue-specific genes and pathways essential for thyroid hormone-induced adult stem cell development. 2013, Pubmed , Xenbase
Tarayrah, Epigenetic regulation in adult stem cells and cancers. 2013, Pubmed
Tata, Gene expression during metamorphosis: an ideal model for post-embryonic development. 1993, Pubmed
Tomita, Recruitment of N-CoR/SMRT-TBLR1 corepressor complex by unliganded thyroid hormone receptor for gene repression during frog development. 2004, Pubmed , Xenbase
Torchia, The transcriptional co-activator p/CIP binds CBP and mediates nuclear-receptor function. 1997, Pubmed
Tsai, Molecular mechanisms of action of steroid/thyroid receptor superfamily members. 1994, Pubmed
van der Flier, Stem cells, self-renewal, and differentiation in the intestinal epithelium. 2009, Pubmed
Wang, Characterization of human epigenomes. 2009, Pubmed
Wang, Developmental regulation and function of thyroid hormone receptors and 9-cis retinoic acid receptors during Xenopus tropicalis metamorphosis. 2008, Pubmed , Xenbase
Wang, Combinatorial patterns of histone acetylations and methylations in the human genome. 2008, Pubmed
Wong, Determinants of chromatin disruption and transcriptional regulation instigated by the thyroid hormone receptor: hormone-regulated chromatin disruption is not sufficient for transcriptional activation. 1997, Pubmed , Xenbase
Wong, Coordinated regulation of and transcriptional activation by Xenopus thyroid hormone and retinoid X receptors. 1995, Pubmed , Xenbase
Wong, Distinct requirements for chromatin assembly in transcriptional repression by thyroid hormone receptor and histone deacetylase. 1998, Pubmed , Xenbase
Wong, A role for nucleosome assembly in both silencing and activation of the Xenopus TR beta A gene by the thyroid hormone receptor. 1995, Pubmed , Xenbase
Yen, Physiological and molecular basis of thyroid hormone action. 2001, Pubmed
Yoon, Purification and functional characterization of the human N-CoR complex: the roles of HDAC3, TBL1 and TBLR1. 2003, Pubmed
Young, Efficient targeted gene disruption in the soma and germ line of the frog Xenopus tropicalis using engineered zinc-finger nucleases. 2011, Pubmed , Xenbase
Zhang, The mechanism of action of thyroid hormones. 2000, Pubmed
Zhang, The N-CoR-HDAC3 nuclear receptor corepressor complex inhibits the JNK pathway through the integral subunit GPS2. 2002, Pubmed