Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly.
We suggest using a current version of Chrome,
FireFox, or Safari.
Genetics
2016 Jan 01;2021:123-39. doi: 10.1534/genetics.115.183137.
Show Gene links
Show Anatomy links
Identifying Regulators of Morphogenesis Common to Vertebrate Neural Tube Closure and Caenorhabditis elegans Gastrulation.
Sullivan-Brown JL
,
Tandon P
,
Bird KE
,
Dickinson DJ
,
Tintori SC
,
Heppert JK
,
Meserve JH
,
Trogden KP
,
Orlowski SK
,
Conlon FL
,
Goldstein B
.
???displayArticle.abstract???
Neural tube defects including spina bifida are common and severe congenital disorders. In mice, mutations in more than 200 genes can result in neural tube defects. We hypothesized that this large gene set might include genes whose homologs contribute to morphogenesis in diverse animals. To test this hypothesis, we screened a set of Caenorhabditis elegans homologs for roles in gastrulation, a topologically similar process to vertebrate neural tube closure. Both C. elegans gastrulation and vertebrate neural tube closure involve the internalization of surface cells, requiring tissue-specific gene regulation, actomyosin-driven apical constriction, and establishment and maintenance of adhesions between specific cells. Our screen identified several neural tube defect gene homologs that are required for gastrulation in C. elegans, including the transcription factor sptf-3. Disruption of sptf-3 in C. elegans reduced the expression of early endodermally expressed genes as well as genes expressed in other early cell lineages, establishing sptf-3 as a key contributor to multiple well-studied C. elegans cell fate specification pathways. We also identified members of the actin regulatory WAVE complex (wve-1, gex-2, gex-3, abi-1, and nuo-3a). Disruption of WAVE complex members reduced the narrowing of endodermal cells' apical surfaces. Although WAVE complex members are expressed broadly in C. elegans, we found that expression of a vertebrate WAVE complex member, nckap1, is enriched in the developing neural tube of Xenopus. We show that nckap1 contributes to neural tube closure in Xenopus. This work identifies in vivo roles for homologs of mammalian neural tube defect genes in two manipulable genetic model systems.
Anders,
HTSeq--a Python framework to work with high-throughput sequencing data.
2015, Pubmed
Anders,
HTSeq--a Python framework to work with high-throughput sequencing data.
2015,
Pubmed
Anderson,
Polarization of the C. elegans embryo by RhoGAP-mediated exclusion of PAR-6 from cell contacts.
2008,
Pubmed
Bastiani,
Heterotrimeric G proteins in C. elegans.
2006,
Pubmed
Bell,
Sp8 is crucial for limb outgrowth and neuropore closure.
2003,
Pubmed
Bernadskaya,
Arp2/3 promotes junction formation and maintenance in the Caenorhabditis elegans intestine by regulating membrane association of apical proteins.
2011,
Pubmed
Boeck,
Specific roles for the GATA transcription factors end-1 and end-3 during C. elegans E-lineage development.
2011,
Pubmed
Boulton,
BRCA1/BARD1 orthologs required for DNA repair in Caenorhabditis elegans.
2004,
Pubmed
Brenner,
The genetics of Caenorhabditis elegans.
1974,
Pubmed
Broitman-Maduro,
Specification of the C. elegans MS blastomere by the T-box factor TBX-35.
2006,
Pubmed
Chung,
Sp8 regulates inner ear development.
2014,
Pubmed
,
Xenbase
Craven,
Gata2 specifies serotonergic neurons downstream of sonic hedgehog.
2004,
Pubmed
Dickinson,
Streamlined Genome Engineering with a Self-Excising Drug Selection Cassette.
2015,
Pubmed
Dickinson,
Engineering the Caenorhabditis elegans genome using Cas9-triggered homologous recombination.
2013,
Pubmed
Dubielecka,
Essential role for Abi1 in embryonic survival and WAVE2 complex integrity.
2011,
Pubmed
Eden,
Mechanism of regulation of WAVE1-induced actin nucleation by Rac1 and Nck.
2002,
Pubmed
Edgar,
Culture and manipulation of embryonic cells.
2012,
Pubmed
Edgar,
DNA synthesis and the control of embryonic gene expression in C. elegans.
1988,
Pubmed
Grana,
SAX-7/L1CAM and HMR-1/cadherin function redundantly in blastomere compaction and non-muscle myosin accumulation during Caenorhabditis elegans gastrulation.
2010,
Pubmed
Gray,
The planar cell polarity effector Fuz is essential for targeted membrane trafficking, ciliogenesis and mouse embryonic development.
2009,
Pubmed
,
Xenbase
Griesel,
Sp8 controls the anteroposterior patterning at the midbrain-hindbrain border.
2006,
Pubmed
Haigo,
Shroom induces apical constriction and is required for hingepoint formation during neural tube closure.
2003,
Pubmed
,
Xenbase
Harland,
In situ hybridization: an improved whole-mount method for Xenopus embryos.
1991,
Pubmed
,
Xenbase
Harrell,
Internalization of multiple cells during C. elegans gastrulation depends on common cytoskeletal mechanisms but different cell polarity and cell fate regulators.
2011,
Pubmed
Harris,
An update to the list of mouse mutants with neural tube closure defects and advances toward a complete genetic perspective of neural tube closure.
2010,
Pubmed
Harris,
Mouse mutants with neural tube closure defects and their role in understanding human neural tube defects.
2007,
Pubmed
Harris,
Insights into prevention of human neural tube defects by folic acid arising from consideration of mouse mutants.
2009,
Pubmed
Hashimshony,
Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer.
2015,
Pubmed
,
Xenbase
Hildebrand,
Shroom regulates epithelial cell shape via the apical positioning of an actomyosin network.
2005,
Pubmed
Hildebrand,
Shroom, a PDZ domain-containing actin-binding protein, is required for neural tube morphogenesis in mice.
1999,
Pubmed
Hirose,
An Sp1 transcription factor coordinates caspase-dependent and -independent apoptotic pathways.
2013,
Pubmed
Kamath,
Genome-wide RNAi screening in Caenorhabditis elegans.
2003,
Pubmed
Kamath,
Effectiveness of specific RNA-mediated interference through ingested double-stranded RNA in Caenorhabditis elegans.
2001,
Pubmed
Kasberg,
SP8 regulates signaling centers during craniofacial development.
2013,
Pubmed
Kawakami,
Sp8 and Sp9, two closely related buttonhead-like transcription factors, regulate Fgf8 expression and limb outgrowth in vertebrate embryos.
2004,
Pubmed
Kieserman,
High-magnification in vivo imaging of Xenopus embryos for cell and developmental biology.
2010,
Pubmed
,
Xenbase
Kim,
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
2013,
Pubmed
Laufer,
Segregation of developmental potential in early embryos of Caenorhabditis elegans.
1980,
Pubmed
Lee,
The FERM protein Epb4.1l5 is required for organization of the neural plate and for the epithelial-mesenchymal transition at the primitive streak of the mouse embryo.
2007,
Pubmed
Lee,
Mechanisms of cell positioning during C. elegans gastrulation.
2003,
Pubmed
Lee,
Wnt/Frizzled signaling controls C. elegans gastrulation by activating actomyosin contractility.
2006,
Pubmed
Liu,
MIM regulates vertebrate neural tube closure.
2011,
Pubmed
,
Xenbase
Machesky,
Scar1 and the related Wiskott-Aldrich syndrome protein, WASP, regulate the actin cytoskeleton through the Arp2/3 complex.
,
Pubmed
Machesky,
Scar, a WASp-related protein, activates nucleation of actin filaments by the Arp2/3 complex.
1999,
Pubmed
Maduro,
Making worm guts: the gene regulatory network of the Caenorhabditis elegans endoderm.
2002,
Pubmed
Maduro,
Genetic redundancy in endoderm specification within the genus Caenorhabditis.
2005,
Pubmed
Maduro,
Maternal deployment of the embryonic SKN-1-->MED-1,2 cell specification pathway in C. elegans.
2007,
Pubmed
Migeotte,
Rac1 mediates morphogenetic responses to intercellular signals in the gastrulating mouse embryo.
2011,
Pubmed
Miki,
WAVE, a novel WASP-family protein involved in actin reorganization induced by Rac.
1998,
Pubmed
Muñoz-Soriano,
Planar cell polarity signaling in collective cell movements during morphogenesis and disease.
2012,
Pubmed
Nance,
Gastrulation in C. elegans.
2005,
Pubmed
Nance,
C. elegans PAR-3 and PAR-6 are required for apicobasal asymmetries associated with cell adhesion and gastrulation.
2003,
Pubmed
Nance,
Cell polarity and gastrulation in C. elegans.
2002,
Pubmed
Nardelli,
Expression and genetic interaction of transcription factors GATA-2 and GATA-3 during development of the mouse central nervous system.
1999,
Pubmed
Nishimura,
Shroom3-mediated recruitment of Rho kinases to the apical cell junctions regulates epithelial and neuroepithelial planar remodeling.
2008,
Pubmed
Nishimura,
Planar cell polarity links axes of spatial dynamics in neural-tube closure.
2012,
Pubmed
O'Leary,
Area patterning of the mammalian cortex.
2007,
Pubmed
Ono,
Two Caenorhabditis elegans actin depolymerizing factor/cofilin proteins, encoded by the unc-60 gene, differentially regulate actin filament dynamics.
1998,
Pubmed
Ossipova,
Role of Rab11 in planar cell polarity and apical constriction during vertebrate neural tube closure.
2014,
Pubmed
,
Xenbase
Owraghi,
Roles of the Wnt effector POP-1/TCF in the C. elegans endomesoderm specification gene network.
2010,
Pubmed
Patel,
The WAVE/SCAR complex promotes polarized cell movements and actin enrichment in epithelia during C. elegans embryogenesis.
2008,
Pubmed
Penberthy,
Pur alpha and Sp8 as opposing regulators of neural gata2 expression.
2004,
Pubmed
Ponferrada,
CRIM1 complexes with ß-catenin and cadherins, stabilizes cell-cell junctions and is critical for neural morphogenesis.
2012,
Pubmed
,
Xenbase
Rakeman,
Axis specification and morphogenesis in the mouse embryo require Nap1, a regulator of WAVE-mediated actin branching.
2006,
Pubmed
Rauzi,
Closing in on mechanisms of tissue morphogenesis.
2009,
Pubmed
Roh-Johnson,
In vivo roles for Arp2/3 in cortical actin organization during C. elegans gastrulation.
2009,
Pubmed
Roh-Johnson,
Triggering a cell shape change by exploiting preexisting actomyosin contractions.
2012,
Pubmed
Sahara,
Sp8 exhibits reciprocal induction with Fgf8 but has an opposing effect on anterior-posterior cortical area patterning.
2007,
Pubmed
Sawyer,
Apical constriction: a cell shape change that can drive morphogenesis.
2010,
Pubmed
,
Xenbase
Sawyer,
Overcoming redundancy: an RNAi enhancer screen for morphogenesis genes in Caenorhabditis elegans.
2011,
Pubmed
Schaeper,
A clustered set of three Sp-family genes is ancestral in the Metazoa: evidence from sequence analysis, protein domain structure, developmental expression patterns and chromosomal location.
2010,
Pubmed
Schoenwolf,
Mechanisms of neurulation: traditional viewpoint and recent advances.
1990,
Pubmed
Severson,
A Formin Homology protein and a profilin are required for cytokinesis and Arp2/3-independent assembly of cortical microfilaments in C. elegans.
2002,
Pubmed
Shelton,
Time-dependent responses to glp-1-mediated inductions in early C. elegans embryos.
1996,
Pubmed
Soderling,
Loss of WAVE-1 causes sensorimotor retardation and reduced learning and memory in mice.
2003,
Pubmed
Sojka,
Congenital heart disease protein 5 associates with CASZ1 to maintain myocardial tissue integrity.
2014,
Pubmed
,
Xenbase
Solnica-Krezel,
Embryo morphogenesis: getting down to cells and molecules.
2003,
Pubmed
,
Xenbase
Soto,
The GEX-2 and GEX-3 proteins are required for tissue morphogenesis and cell migrations in C. elegans.
2002,
Pubmed
Sulston,
The embryonic cell lineage of the nematode Caenorhabditis elegans.
1983,
Pubmed
Sun,
Modulation of Caenorhabditis elegans transcription factor activity by HIM-8 and the related Zinc-Finger ZIM proteins.
2007,
Pubmed
Suske,
Mammalian SP/KLF transcription factors: bring in the family.
2005,
Pubmed
Takenawa,
The WASP-WAVE protein network: connecting the membrane to the cytoskeleton.
2007,
Pubmed
Tandon,
Tcf21 regulates the specification and maturation of proepicardial cells.
2013,
Pubmed
,
Xenbase
Tandon,
Morpholino injection in Xenopus.
2012,
Pubmed
,
Xenbase
Timmons,
Specific interference by ingested dsRNA.
1998,
Pubmed
Treichel,
mBtd is required to maintain signaling during murine limb development.
2003,
Pubmed
Ulm,
Developmental functions for the Caenorhabditis elegans Sp protein SPTF-3.
2011,
Pubmed
Wallingford,
Neural tube closure requires Dishevelled-dependent convergent extension of the midline.
2002,
Pubmed
,
Xenbase
Wallingford,
The continuing challenge of understanding, preventing, and treating neural tube defects.
2013,
Pubmed
Wehman,
The P4-ATPase TAT-5 inhibits the budding of extracellular vesicles in C. elegans embryos.
2011,
Pubmed
Werts,
Dynamic localization of C. elegans TPR-GoLoco proteins mediates mitotic spindle orientation by extrinsic signaling.
2011,
Pubmed
Withee,
Caenorhabditis elegans WASP and Ena/VASP proteins play compensatory roles in morphogenesis and neuronal cell migration.
2004,
Pubmed
Yamazaki,
WAVE2 is required for directed cell migration and cardiovascular development.
2003,
Pubmed
Yan,
WAVE2 deficiency reveals distinct roles in embryogenesis and Rac-mediated actin-based motility.
2003,
Pubmed
Yan,
Shaping morphogen gradients by proteoglycans.
2009,
Pubmed
Yokota,
Nap1-regulated neuronal cytoskeletal dynamics is essential for the final differentiation of neurons in cerebral cortex.
2007,
Pubmed
Yuan,
The Caenorhabditis elegans cell death gene ced-4 encodes a novel protein and is expressed during the period of extensive programmed cell death.
1992,
Pubmed
Zembrzycki,
Genetic interplay between the transcription factors Sp8 and Emx2 in the patterning of the forebrain.
2007,
Pubmed
Zhu,
end-1 encodes an apparent GATA factor that specifies the endoderm precursor in Caenorhabditis elegans embryos.
1997,
Pubmed
,
Xenbase
Zou,
Apaf-1, a human protein homologous to C. elegans CED-4, participates in cytochrome c-dependent activation of caspase-3.
1997,
Pubmed