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Here, we report the genome sequences of three bacterial isolates, Kinneretia sp. strain XES5, Shinella sp. strain XGS7, and Vogesella sp. strain XCS3, which were cultured from skin of adult female laboratory-bred Xenopus laevis.
Altschul,
Basic local alignment search tool.
1990, Pubmed
Altschul,
Basic local alignment search tool.
1990,
Pubmed
An,
Shinella granuli gen. nov., sp. nov., and proposal of the reclassification of Zoogloea ramigera ATCC 19623 as Shinella zoogloeoides sp. nov.
2006,
Pubmed
Bishop,
Bacterial lipopolysaccharides can initiate regeneration of the Xenopus tadpole tail.
2021,
Pubmed
Blum,
Xenopus: An Undervalued Model Organism to Study and Model Human Genetic Disease.
2018,
Pubmed
,
Xenbase
Chen,
fastp: an ultra-fast all-in-one FASTQ preprocessor.
2018,
Pubmed
Chou,
Vogesella perlucida sp. nov., a non-pigmented bacterium isolated from spring water.
2008,
Pubmed
Ciufo,
Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI.
2018,
Pubmed
Day,
Formation of indigoidine derived-pigments contributes to the adaptation of Vogesella sp. strain EB to cold aquatic iron-oxidizing environments.
2017,
Pubmed
Gomila,
Kinneretia asaccharophila gen. nov., sp. nov., isolated from a freshwater lake, a member of the Rubrivivax branch of the family Comamonadaceae.
2010,
Pubmed
Grimes,
Systematic study of the genus Vogesella gen. nov. and its type species, Vogesella indigofera comb. nov.
1997,
Pubmed
Grouzdev,
Draft genome sequence data and analysis of Shinella sp. strain JR1-6 isolated from nitrate- and radionuclide-contaminated groundwater in Russia.
2019,
Pubmed
Harland,
Xenopus research: metamorphosed by genetics and genomics.
2011,
Pubmed
,
Xenbase
Hollensteiner,
Complete Genome Sequence of Kinneretia sp. Strain DAIF2, Isolated from a Freshwater Pond.
2021,
Pubmed
Horb,
Xenopus Resources: Transgenic, Inbred and Mutant Animals, Training Opportunities, and Web-Based Support.
2019,
Pubmed
,
Xenbase
Jain,
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.
2018,
Pubmed
Jones,
Draft Genome Sequences of Achromobacter piechaudii GCS2, Agrobacterium sp. Strain SUL3, Microbacterium sp. Strain GCS4, Shinella sp. Strain GWS1, and Shinella sp. Strain SUS2 Isolated from Consortium with the Hydrocarbon-Producing Alga Botryococcus braunii.
2016,
Pubmed
Jørgensen,
Vogesella mureinivorans sp. nov., a peptidoglycan-degrading bacterium from lake water.
2010,
Pubmed
Kolmogorov,
Assembly of long, error-prone reads using repeat graphs.
2019,
Pubmed
Lan,
Vogesella urethralis sp. nov., isolated from human urine, and emended descriptions of Vogesella perlucida and Vogesella mureinivorans.
2020,
Pubmed
Lee-Liu,
The African clawed frog Xenopus laevis: A model organism to study regeneration of the central nervous system.
2017,
Pubmed
,
Xenbase
Li,
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.
2021,
Pubmed
Li,
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.
2016,
Pubmed
Marian,
Genome analysis provides insights into the biocontrol ability of Mitsuaria sp. strain TWR114.
2021,
Pubmed
NCBI Resource Coordinators,
Database resources of the National Center for Biotechnology Information.
2018,
Pubmed
Parks,
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
2015,
Pubmed
Phipps,
Model systems for regeneration: Xenopus.
2020,
Pubmed
,
Xenbase
Poehlein,
Genome sequence of Shinella sp. strain DD12, isolated from homogenized guts of starved Daphnia magna.
2016,
Pubmed
Qiu,
The Complete Genome Sequence of the Nicotine-Degrading Bacterium Shinella sp. HZN7.
2016,
Pubmed
Sheu,
Vogesella fluminis sp. nov., isolated from a freshwater river, and emended description of the genus Vogesella.
2013,
Pubmed
Subhash,
Vogesella alkaliphila sp. nov., isolated from an alkaline soil, and emended description of the genus Vogesella.
2013,
Pubmed
Tatusova,
NCBI prokaryotic genome annotation pipeline.
2016,
Pubmed
Vaser,
Time- and memory-efficient genome assembly with Raven.
2021,
Pubmed
Walker,
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
2014,
Pubmed
Wang,
Quantifying the Importance of the Rare Biosphere for Microbial Community Response to Organic Pollutants in a Freshwater Ecosystem.
2017,
Pubmed
Wick,
Trycycler: consensus long-read assemblies for bacterial genomes.
2021,
Pubmed
Wick,
Completing bacterial genome assemblies with multiplex MinION sequencing.
2017,
Pubmed
Woo,
High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp.
2017,
Pubmed
