|
XB-MORPHOLINO-17249130
Morpholino Name:
ahnak MO1
Synonyms: TNeu103f06, Xtnovel34
Target mRNA: ahnak
Morpholino Type: splice blocking morpholino
Sequence: 5' TTCTTCTTCTTCTTTATCCATCTTG 3'
Source: Gene Tools LLC
Synonyms: TNeu103f06, Xtnovel34
Target mRNA: ahnak
Morpholino Type: splice blocking morpholino
Sequence: 5' TTCTTCTTCTTCTTTATCCATCTTG 3'
Source: Gene Tools LLC
| Target mRNA | tropicalis | laevis.L | laevis.S | ||||
| Identities | 24/25 | 22/25 | 24/25 | ||||
genome
MO
|
5' CTAGATGGATAAAGAAGAAGAAGAA 3'
| |||||||||||||||||||||||
3' GTTCTACCTATTTCTTCTTCTTCTT 5' |
5' CTAGATGGAGAAAGAAGAAGAAGAC 3' | ||||||| |||||||||||||| 3' GTTCTACCTATTTCTTCTTCTTCTT 5' |
5' CTAGATGGATAAAGAAGAAGAAGAA 3'
| |||||||||||||||||||||||
3' GTTCTACCTATTTCTTCTTCTTCTT 5' |
||||
Genomic Alignments  |
Position | Identity | Strand | Target | Target mRNA | ||
| laevis 10.1 | Chr4S:1655584..1655608 | 24/25 | Antisense | target | ahnak.S | ||
| Chr4L:27800977..27801001 | 22/25 | Sense | target | ahnak.L | |||
| Chr6L:48865152..48865176 | 23/25 | Antisense | off-target | rarb.L | |||
| Chr5L:163949681..163949705 | 22/25 | Antisense | off-target | elp3.L | |||
| Chr5L:104240038..104240062 | 22/25 | Sense | off-target | ephb3.L | |||
| Chr2L:122484516..122484540 | 22/25 | Sense | off-target | myo16.L | |||
| Chr2L:132546733..132546757 | 22/25 | Sense | off-target | klf12.L | |||
| Chr2S:5492922..5492946 | 22/25 | Antisense | off-target | coro6.S | |||
| Chr7L:136962692..136962716 | 22/25 | Sense | off-target | igsf21.L | |||
| Chr7L:136962844..136962868 | 22/25 | Sense | off-target | igsf21.L | |||
| Chr4S:2464403..2464427 | 22/25 | Sense | off-target | LOC121393417 | |||
| Chr4S:2544422..2544446 | 22/25 | Sense | off-target | LOC121393152 | |||
| Chr5L:4016513..4016537 | 22/25 | Sense | off-target | LOC108716082 | |||
| Chr7L:17003179..17003203 | 22/25 | Antisense | off-target | LOC121395341 | |||
| Chr8L:109313402..109313426 | 22/25 | Sense | off-target | LOC108699276 | |||
| Chr1L:229493276..229493300 | 22/25 | Antisense | off-target | LOC108718850 | |||
| Chr2S:65609674..65609698 | 22/25 | Antisense | off-target | LOC108709107 | |||
| Chr4L:52405635..52405659 | 22/25 | Sense | off-target | LOC121403149 | |||
| Chr4L:52405635..52405659 | 22/25 | Sense | off-target | LOC108705983 | |||
| Chr4L:53577134..53577158 | 22/25 | Antisense | off-target | LOC108714052 | |||
| Chr4S:19970488..19970512 | 21/25 | Sense | off-target | ctr9.S | |||
| Chr6S:13936405..13936429 | 21/25 | Sense | off-target | pfkp.S | |||
| Chr8L:132265778..132265802 | 21/25 | Antisense | off-target | il6r.L | |||
| Chr9_10L:43247303..43247327 | 21/25 | Antisense | off-target | raly.L | |||
| Chr2S:125884627..125884651 | 21/25 | Antisense | off-target | lcp1.S | |||
| Chr4L:92759206..92759230 | 21/25 | Sense | off-target | dio1.L | |||
| Chr5S:7422385..7422409 | 21/25 | Sense | off-target | glp1r.S | |||
| Chr5S:7422516..7422540 | 21/25 | Sense | off-target | glp1r.S | |||
| Chr7S:109855167..109855191 | 21/25 | Antisense | off-target | fli1b.S | |||
| Chr7S:109856951..109856975 | 21/25 | Antisense | off-target | fli1b.S | |||
| Chr8L:132386040..132386064 | 21/25 | Antisense | off-target | kcnn3.L | |||
| Chr1L:29585762..29585786 | 21/25 | Antisense | off-target | proml-1 | |||
| Chr1S:187843002..187843026 | 21/25 | Antisense | off-target | rxfp3.S | |||
| Chr2L:88147384..88147408 | 21/25 | Antisense | off-target | rspo1.L | |||
| Chr2S:7155001..7155025 | 21/25 | Antisense | off-target | trpv3.S | |||
| Chr3L:115644372..115644396 | 21/25 | Antisense | off-target | mfge8.L | |||
| Chr3L:2464285..2464309 | 21/25 | Antisense | off-target | med21.L | |||
| Chr5L:2222189..2222213 | 21/25 | Antisense | off-target | gpcpd1.L | |||
| Chr7S:111340538..111340562 | 21/25 | Antisense | off-target | igsf21.S | |||
| Chr9_10S:113914005..113914029 | 21/25 | Antisense | off-target | sez6l2.S | |||
| Chr4L:130624638..130624662 | 21/25 | Sense | off-target | cav3.1.L | |||
| Chr8S:82071134..82071158 | 21/25 | Sense | off-target | npdc1.2.S | |||
| Chr9_10L:465590..465614 | 21/25 | Sense | off-target | stat3.2.L | |||
| Chr9_10L:52484834..52484858 | 21/25 | Sense | off-target | bmerb1l.L | |||
| Chr1L:57179254..57179278 | 21/25 | Sense | off-target | gucy1b1.L | |||
| Chr2S:167438589..167438613 | 21/25 | Antisense | off-target | stard10.S | |||
| Chr2S:49327112..49327136 | 21/25 | Antisense | off-target | atp6ap2.S | |||
| Chr1L:118537993..118538017 | 21/25 | Sense | off-target | slc25a51.L | |||
| Chr4S:5462631..5462655 | 21/25 | Sense | off-target | LOC108715188 | |||
| Chr5L:156337118..156337142 | 21/25 | Sense | off-target | LOC108717206 | |||
| Chr6L:130588380..130588404 | 21/25 | Antisense | off-target | LOC121394500 | |||
| Chr6L:130639116..130639140 | 21/25 | Antisense | off-target | LOC121394744 | |||
| Chr6L:130760400..130760424 | 21/25 | Antisense | off-target | LOC121394748 | |||
| Chr6L:161610505..161610529 | 21/25 | Sense | off-target | LOC108719466 | |||
| Chr8L:123321403..123321427 | 21/25 | Sense | off-target | LOC121397343 | |||
| Chr8L:127765106..127765130 | 21/25 | Antisense | off-target | LOC121397224 | |||
| Chr9_10L:6464729..6464753 | 21/25 | Sense | off-target | LOC108700860 | |||
| Chr8L:127765125..127765149 | 21/25 | Antisense | off-target | LOC121397224 | |||
| Chr8L:127765144..127765168 | 21/25 | Antisense | off-target | LOC121397224 | |||
| Chr8L:59830379..59830403 | 21/25 | Antisense | off-target | LOC121397039 | |||
| Chr9_10L:15212044..15212068 | 21/25 | Antisense | off-target | LOC108700932 | |||
| Chr2L:33589574..33589598 | 21/25 | Antisense | off-target | LOC108707439 | |||
| Chr2S:12583739..12583763 | 21/25 | Antisense | off-target | LOC108708858 | |||
| Chr2S:24346108..24346132 | 21/25 | Sense | off-target | LOC108709082 | |||
| Chr3L:98587185..98587209 | 21/25 | Sense | off-target | LOC108711307 | |||
| Chr4L:149288049..149288073 | 21/25 | Antisense | off-target | LOC108714735 | |||
| Chr4S:11520627..11520651 | 21/25 | Antisense | off-target | LOC108715220 | |||
| Chr4S:2509064..2509088 | 22/25 | Sense | unknown | ||||
| Chr6L:6585380..6585404 | 22/25 | Sense | unknown | ||||
| Chr6L:91618051..91618075 | 22/25 | Antisense | unknown | ||||
| Chr9_10L:106487825..106487849 | 22/25 | Antisense | unknown | ||||
| Chr1L:227670491..227670515 | 22/25 | Antisense | unknown | ||||
| Chr4S:33479292..33479316 | 21/25 | Sense | unknown | ||||
| Chr5L:141384548..141384572 | 21/25 | Sense | unknown | ||||
| Chr5S:44226002..44226026 | 21/25 | Sense | unknown | ||||
| Chr5L:165411605..165411629 | 21/25 | Sense | unknown | ||||
| Chr5L:22251721..22251745 | 21/25 | Sense | unknown | ||||
| Chr5L:22251815..22251839 | 21/25 | Sense | unknown | ||||
| Chr5S:21538174..21538198 | 21/25 | Antisense | unknown | ||||
| Chr5S:32508743..32508767 | 21/25 | Antisense | unknown | ||||
| Chr6S:63218919..63218943 | 21/25 | Sense | unknown | ||||
| Chr6L:135648969..135648993 | 21/25 | Antisense | unknown | ||||
| Chr7L:4290050..4290074 | 21/25 | Antisense | unknown | ||||
| Chr8S:22978074..22978098 | 21/25 | Antisense | unknown | ||||
| Chr9_10L:15913242..15913266 | 21/25 | Antisense | unknown | ||||
| Chr9_10L:15913401..15913425 | 21/25 | Antisense | unknown | ||||
| Chr9_10L:2320508..2320532 | 21/25 | Sense | unknown | ||||
| Chr9_10L:46396231..46396255 | 21/25 | Antisense | unknown | ||||
| Chr9_10L:53401329..53401353 | 21/25 | Antisense | unknown | ||||
| Chr9_10S:49826031..49826055 | 21/25 | Antisense | unknown | ||||
| Chr1L:143589971..143589995 | 21/25 | Antisense | unknown | ||||
| Chr1L:20181533..20181557 | 21/25 | Sense | unknown | ||||
| Chr1L:224195984..224196008 | 21/25 | Antisense | unknown | ||||
| Chr9_10L:43145368..43145392 | 21/25 | Sense | unknown | ||||
| Chr1L:230141569..230141593 | 21/25 | Antisense | unknown | ||||
| Chr1S:147598137..147598161 | 21/25 | Sense | unknown | ||||
| Chr1S:172571688..172571712 | 21/25 | Sense | unknown | ||||
| Chr1S:198401054..198401078 | 21/25 | Antisense | unknown | ||||
| Chr1S:3816815..3816839 | 21/25 | Sense | unknown | ||||
| Chr1S:62507642..62507666 | 21/25 | Antisense | unknown | ||||
| Chr2L:181662118..181662142 | 21/25 | Antisense | unknown | ||||
| Chr2L:81259729..81259753 | 21/25 | Sense | unknown | ||||
| Chr2L:86089351..86089375 | 21/25 | Antisense | unknown | ||||
| Chr2S:161935004..161935028 | 21/25 | Antisense | unknown | ||||
| Chr2S:28749507..28749531 | 21/25 | Antisense | unknown | ||||
| Chr2S:28749526..28749550 | 21/25 | Antisense | unknown | ||||
| Chr2S:21051226..21051250 | 21/25 | Antisense | unknown | ||||
| Chr3L:2362698..2362722 | 21/25 | Antisense | unknown | ||||
| Chr3L:3536716..3536740 | 21/25 | Sense | unknown | ||||
| Chr3L:3537252..3537276 | 21/25 | Sense | unknown | ||||
| Chr3L:65241135..65241159 | 21/25 | Antisense | unknown | ||||
| Chr3S:3749039..3749063 | 21/25 | Antisense | unknown | ||||
| Chr4L:10104547..10104571 | 21/25 | Sense | unknown | ||||
| Chr4L:151411891..151411915 | 21/25 | Antisense | unknown | ||||
| Chr4L:46597759..46597783 | 21/25 | Antisense | unknown | ||||
| Chr4S:16922452..16922476 | 21/25 | Antisense | unknown | tropicalis 10.0 | Chr4:36700178..36700202 | 24/25 | Sense | target | ahnak |
| Chr1:198455140..198455164 | 24/25 | Antisense | off-target | LOC100497037 | |||
| Chr1:129790077..129790101 | 22/25 | Antisense | off-target | smc5 | |||
| Chr2:117801879..117801903 | 22/25 | Sense | off-target | myo16 | |||
| Chr7:70289210..70289234 | 22/25 | Antisense | off-target | tirap | |||
| Chr5:129592274..129592298 | 21/25 | Antisense | off-target | gk5 | |||
| Chr2:155366860..155366884 | 21/25 | Antisense | off-target | lnx2 | |||
| Chr8:1475143..1475167 | 21/25 | Sense | off-target | syn1 | |||
| Chr1:99277489..99277513 | 21/25 | Sense | off-target | thop1 | |||
| Chr1:99277502..99277526 | 21/25 | Sense | off-target | thop1 | |||
| Chr10:47064367..47064391 | 21/25 | Antisense | off-target | myocd | |||
| Chr2:25995635..25995659 | 21/25 | Antisense | off-target | robo2 | |||
| Chr3:138169760..138169784 | 21/25 | Sense | off-target | atg4d | |||
| Chr3:138170047..138170071 | 21/25 | Sense | off-target | atg4d | |||
| Chr8:66443788..66443812 | 21/25 | Antisense | off-target | lrch2 | |||
| Chr8:81816482..81816506 | 21/25 | Sense | off-target | adad2 | |||
| Chr9:48601802..48601826 | 21/25 | Antisense | off-target | trpm2 | |||
| Chr1:65912019..65912043 | 21/25 | Sense | off-target | spata5 | |||
| Chr4:8737467..8737491 | 21/25 | Antisense | off-target | lrrc4c | |||
| Chr6:148414925..148414949 | 21/25 | Sense | off-target | adgrb1 | |||
| Chr7:1375325..1375349 | 21/25 | Sense | off-target | sorcs1 | |||
| Chr1:184685447..184685471 | 21/25 | Sense | off-target | iqgap2 | |||
| Chr3:987060..987084 | 21/25 | Sense | off-target | slco1b3 | |||
| Chr3:987246..987270 | 21/25 | Sense | off-target | slco1b3 | |||
| Chr6:7370910..7370934 | 21/25 | Sense | off-target | cry-dash | |||
| Chr1:5580622..5580646 | 21/25 | Antisense | off-target | LOC116408400 | |||
| Chr1:5580731..5580755 | 21/25 | Antisense | off-target | LOC116408400 | |||
| Chr3:138169760..138169784 | 21/25 | Sense | off-target | LOC105945363 | |||
| Chr3:138170047..138170071 | 21/25 | Sense | off-target | LOC105945363 | |||
| Chr4:112116870..112116894 | 21/25 | Sense | off-target | LOC101733911 | |||
| Chr7:20201760..20201784 | 21/25 | Antisense | off-target | LOC100486640 | |||
| Chr9:7302025..7302049 | 21/25 | Antisense | off-target | LOC116407644 | |||
| Chr6:118128834..118128858 | 22/25 | Antisense | unknown | ||||
| Chr1:183727278..183727302 | 22/25 | Sense | unknown | ||||
| Chr2:111548833..111548857 | 21/25 | Sense | unknown | ||||
| Chr2:179846077..179846101 | 21/25 | Antisense | unknown | ||||
| Chr4:135398710..135398734 | 21/25 | Sense | unknown | ||||
| Chr4:8525233..8525257 | 21/25 | Sense | unknown | ||||
| Chr6:137795255..137795279 | 21/25 | Antisense | unknown | ||||
| Chr2:143525701..143525725 | 21/25 | Antisense | unknown | ||||
| Chr7:126811798..126811822 | 21/25 | Sense | unknown | ||||
| Chr7:56380406..56380430 | 21/25 | Antisense | unknown | ||||
| Chr8:145673628..145673652 | 21/25 | Antisense | unknown | ||||
| Chr8:18055072..18055096 | 21/25 | Sense | unknown | ||||
| Chr8:18377182..18377206 | 21/25 | Sense | unknown | ||||
| Chr8:20501652..20501676 | 21/25 | Sense | unknown | ||||
| Chr8:27255792..27255816 | 21/25 | Sense | unknown | ||||
| Chr9:29784145..29784169 | 21/25 | Antisense | unknown | ||||
| Chr9:84692753..84692777 | 21/25 | Sense | unknown | ||||
| Chr1:169398223..169398247 | 21/25 | Antisense | unknown | ||||
| Publications | |||||||
| ???morpholino.displaySummary.papersFirst??? |
Defining synphenotype groups in Xenopus tropicalis by use of antisense morpholino oligonucleotides., PLoS Genet 2006  |
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| ???morpholino.displaySummary.papersRecent??? | |||||||
| ???morpholino.displaySummary.papersAll??? | |||||||
