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Summary Expression Phenotypes Gene Literature (45) GO Terms (12) Nucleotides (133) Proteins (53) Interactants (714) Wiki
XB-GENEPAGE-485395
???displayGene.symbol???:
 cdx1

???displayGene.name???: 
caudal type homeobox 1

???displayGene.synonyms???
cdx-1 ( Nomenclature history )

???displayGene.geneFunction???
homeodomain transcription factor

Protein Function :
Plays a role in transcriptional regulation. Involved in activated KRAS-mediated transcriptional activation of PRKD1. Binds to the PRKD1 promoter. Could play a role in the terminal differentiation of th...[+]



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Human Physical (62), Co-citation (652)

Diseases: 


External Links:
GEO Series :
GSE71006.
1/5
 
Gene ID & Location
Xenbase Gene ID XB-GENE-485396 XB-GENE-17339424 XB-GENE-864834
Gene Symbol cdx1 cdx1.L cdx1.S
Chromosome Chr3 Chr3L Chr3S
???displayGene.molecues??? X. tropicalis X. laevis.L X. laevis.S
Genomic Sequence Version 10.0 Version 10.1 Version 10.1
CDS CDS Gene Model CDS Gene Model CDS Gene Model
Entrez Gene 395055 108710769 397695
Ensembl Gene cdx1 (ENSXETG00000010282)
mRNA RefSeq NCBI Nt  More.. NCBI Nt RefSeq NCBI Nt  More..
Protein RefSeq Swiss-Prot  More.. NCBI Protein TrEMBL  More.. RefSeq Swiss-Prot  More..
Reference Proteome Q90X89 A0A1L8GWE3 Q91622
AlphaFold View on AlphaFold View on AlphaFold View on AlphaFold
???displayGene.genomic??? X. tropicalis X. laevis.L X. laevis.S
Genome Browser
(Click image to open in interactive Genome Browser)
Genomic Synteny Xenbase Simple Synteny Genomicus PANTHER
???displayGene.expression???                  Development Stages                                               Embryonic Tissues                                                                Adult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING In situ: RNA-Seq:
Proteomics X. tropicalis X. laevis.L X. laevis.S
Embryonic Protein Expression Stage profile: cdx1.S
???displayGene.mophenotype???
???displayGene.mosmith??? tneu087f10      
Orthology
Knowledgebases Entrez Gene Genetic Phenotypes Gene Expression
???displayGene.human???
HGNC, Alliance, Monarch, MIM, GeneCards CDX1 MIM Ensembl, Protein Atlas, Allen Brain Atlas
???displayGene.mouse???
MGI, Alliance Cdx1 MGI, IMPC Ensembl, Allen Brain Atlas, MGI
rat
RGD, Alliance Cdx1 Ensembl
???displayGene.zebrafish???
ZFIN, Alliance ZFIN, Alliance cdx1b cdx1a  ZFIN Ensembl
chicken
GEISHA CDX1 Ensembl
fruit fly
Publications
First The Xenopus Ets transcription factor XER81 is a target of the FGF signaling pathway., Mech Dev 1999     
Most Recent Histological and gene-expression analyses of pyloric sphincter formation during stomach metamorphosis in Xenopus laevis., Dev Biol 2024  
All ???displayGene.papersAll??? 9 ???displayGene.morpholinoPapers??? 1 ???displayGene.omimPapers???
Functional Ontologies X. tropicalis X. laevis.L X. laevis.S
GO 5 terms 3 terms 11 terms
KEGG Pathways
KOG [K] Transcription factor Caudal, contains HOX domain
Reagents X. tropicalis X. laevis.L X. laevis.S
CRISPRscan Tracks cdx1 cdx1.L cdx1.S
Morpholinos cdx1 MO1, cdx1 MO2, cdx1 MO3, cdx1 MO4 cdx1 MO1, cdx1 MO3, cdx1 MO4 cdx1 MO1, cdx1 MO3, cdx1 MO4
Clones Horizon Horizon Horizon
Plasmids Addgene.org Addgene.org


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