Xenbase Image ID: 79890

Fig. 7. Expression patterns of Xenopus orthologues to human genes with multiple BREs. Of the 26 representative orthologues from the 80 genes with available annotation in Xenopus, the expression patterns of 19 genes were analyzed by whole mount in situ hybridization. Expression patterns are organized based on the behavior of each gene in the RT-PCR experiments shown in Table 1 (strong, weak, no change, no data, not examined). Not shown are Id3 (Fig. 3) and BMP2 (Nishimatsu et al., 1992). Shown are the patterns at the neurula and tailbud stages for each gene; refer to Table 1 for a description of each pattern at the gastrula stage. Unless otherwise indicated, for neurula stages, anterior is to the left and dorsal is up. For tailbud stages, lateral views are shown. Image published in: von Bubnoff A et al. (2005) Copyright © 2005. Image reproduced with permission of the Publisher, Elsevier B. V. Gene Synonyms Species Stage(s) Tissue zeb2.S sip1, smad interaction protein 1, XSip1, XZfhx1b, zfhx1b X. laevis Throughout NF stage 14 to NF stage 15 pre-chordal neural plate chordal neural plate kansl2.S flj20436 X. laevis Throughout NF stage 18 pre-chordal neural plate optic field cranial neural crest spdl1.L flj20364, spindly X. laevis Throughout NF stage 18 chordal neural plate trigeminal placode stk3.S LOC108719348, mst2, xstk3 X. laevis Throughout NF stage 18 mesoderm lateral plate mesoderm intermediate mesoderm dorsal snrpe.L b-raf, sm-e, sme X. laevis Throughout NF stage 18 pre-chordal neural plate cranial neural crest optic field ammecr1.L ammerc1 X. laevis Throughout NF stage 18 pre-chordal neural plate chordal neural plate ptpn3.S X. laevis Throughout NF stage 18 pre-chordal neural plate chordal neural plate lateral plate mesoderm intermediate mesoderm dorsal prkca.L pkc-alpha, pkcalpha, pkc-like 2, XPKCI X. laevis Throughout NF stage 18 dorsal dlx5.L dll3, X-dll3 X. laevis Throughout NF stage 18 preplacodal ectoderm anterior placodal area posterior placodal area neural crest csnk2a1.S X. laevis Throughout NF stage 18 pre-chordal neural plate chordal neural plate aadat.S aminoadipate aminotransferase, kat2, katii X. laevis Throughout NF stage 18 otic vesicle dorsal neural plate mesoderm sall1.L LOC108715370, sal-1, sal1, sall1-a, sall1-b, sall1b, sal-like 1, spalt-like 1, tbs, znf794 X. laevis Throughout NF stage 18 floor plate posterior placodal area lrrn1.L figler3, lrrn1-a, lrrn1-b, nlrr-1, nlrr-6, XlNLRR-6, xnlrr-1 X. laevis Throughout NF stage 18 pre-chordal neural plate chordal neural plate optic field cranial neural crest fst.L foll, follistatin, xfs X. laevis Throughout NF stage 18 floor plate chordal neural plate prkd1.L pkcm, pkc-mu, pkd, prkcm, protein kinase C, mu X. laevis Throughout NF stage 20 mesoderm lateral plate mesoderm intermediate mesoderm cranial neural crest olfm4.L tiarin X. laevis Throughout NF stage 20 cranial neural crest wnt11.S wnt11a, Wnt11-R, Wnt11r, WNT11-related X. laevis Throughout NF stage 20 pre-chordal neural plate chordal neural plate neural crest trunk neural crest dach1.S dach X. laevis Throughout NF stage 20 lateral plate mesoderm intermediate mesoderm mesoderm dach1.S dach X. laevis Throughout NF stage 28 hyoid arch retina midbrain pineal gland hindbrain foregut lrrn1.L figler3, lrrn1-a, lrrn1-b, nlrr-1, nlrr-6, XlNLRR-6, xnlrr-1 X. laevis Throughout NF stage 28 pharyngeal arch branchial arch lateral plate mesoderm otic vesicle eye proctodeum forebrain hindbrain roof plate cardinal vein olfm4.L tiarin X. laevis Throughout NF stage 28 mandibular arch hyoid arch proctodeum prkca.L pkc-alpha, pkcalpha, pkc-like 2, XPKCI X. laevis Throughout NF stage 28 head region snrpe.L b-raf, sm-e, sme X. laevis Throughout NF stage 28 pharyngeal arch hyoid arch branchial arch lateral plate mesoderm otic vesicle eye forebrain hindbrain retina dlx5.L dll3, X-dll3 X. laevis Throughout NF stage 28 pharyngeal arch mandibular arch hyoid arch branchial arch otic vesicle dorsal fin margin ventral fin margin hatching gland forebrain diencephalon wnt11.S wnt11a, Wnt11-R, Wnt11r, WNT11-related X. laevis Throughout NF stage 28 pharyngeal arch otic vesicle midbrain hindbrain spinal cord visceral pouch heart ammecr1.L ammerc1 X. laevis Throughout NF stage 29 and 30 pharyngeal arch branchial arch pronephric duct otic vesicle eye brain spinal cord zeb2.S sip1, smad interaction protein 1, XSip1, XZfhx1b, zfhx1b X. laevis Throughout NF stage 29 and 30 eye pronephric mesenchyme cranial placode epibranchial placode facial epibranchial placode lateral line placode hindbrain spinal cord csnk2a1.S X. laevis Throughout NF stage 29 and 30 pharyngeal arch mandibular arch hyoid arch branchial arch otic vesicle eye brain forebrain midbrain hindbrain spinal cord kansl2.S flj20436 X. laevis Throughout NF stage 29 and 30 pharyngeal arch branchial arch pronephric kidney pronephric duct otic vesicle eye forebrain spinal cord ptpn3.S X. laevis Throughout NF stage 29 and 30 chordal neural plate otic vesicle forebrain midbrain spdl1.L flj20364, spindly X. laevis Throughout NF stage 29 and 30 pharyngeal arch branchial arch pronephric kidney otic vesicle forebrain midbrain hindbrain spinal cord ciliary marginal zone roof plate stk3.S LOC108719348, mst2, xstk3 X. laevis Throughout NF stage 29 and 30 dorsal fin prkd1.L pkcm, pkc-mu, pkd, prkcm, protein kinase C, mu X. laevis Throughout NF stage 29 and 30 pharyngeal arch mandibular arch hyoid arch branchial arch pronephric kidney pronephric duct otic vesicle head region roof plate aadat.S aminoadipate aminotransferase, kat2, katii X. laevis Throughout NF stage 33 and 34 otic vesicle forebrain intersomitic region eye pharyngeal arch branchial arch pronephric kidney pronephric duct glomus roof plate lateral plate mesoderm sall1.L LOC108715370, sal-1, sal1, sall1-a, sall1-b, sall1b, sal-like 1, spalt-like 1, tbs, znf794 X. laevis Throughout NF stage 33 and 34 otic vesicle eye tail bud midbrain midbrain-hindbrain boundary lens dorsal fin epibranchial placode fst.L foll, follistatin, xfs X. laevis Throughout NF stage 33 and 34 pronephric kidney pronephric duct otic vesicle midbrain hindbrain spinal cord diencephalon visceral pouch Image source: Published Larger Image Printer Friendly View

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