Fig. 7. Expression patterns of Xenopus orthologues to human genes with multiple BREs. Of the 26 representative orthologues from the 80 genes with available annotation in Xenopus, the expression patterns of 19 genes were analyzed by whole mount in situ hybridization. Expression patterns are organized based on the behavior of each gene in the RT-PCR experiments shown in Table 1 (strong, weak, no change, no data, not examined). Not shown are Id3 (Fig. 3) and BMP2 (Nishimatsu et al., 1992). Shown are the patterns at the neurula and tailbud stages for each gene; refer to Table 1 for a description of each pattern at the gastrula stage. Unless otherwise indicated, for neurula stages, anterior is to the left and dorsal is up. For tailbud stages, lateral views are shown.
Image published in: von Bubnoff A et al. (2005)
Copyright © 2005. Image reproduced with permission of the Publisher, Elsevier B. V.
| Gene | Synonyms | Species | Stage(s) | Tissue |
|---|---|---|---|---|
| zeb2.S | sip1, smad interaction protein 1, XSip1, XZfhx1b, zfhx1b | X. laevis | Throughout NF stage 14 to NF stage 15 | pre-chordal neural plate chordal neural plate |
| kansl2.S | flj20436 | X. laevis | Throughout NF stage 18 | pre-chordal neural plate optic field cranial neural crest |
| spdl1.L | flj20364, spindly | X. laevis | Throughout NF stage 18 | chordal neural plate trigeminal placode |
| stk3.S | LOC108719348, mst2, xstk3 | X. laevis | Throughout NF stage 18 | mesoderm lateral plate mesoderm intermediate mesoderm dorsal |
| snrpe.L | b-raf, sm-e, sme | X. laevis | Throughout NF stage 18 | pre-chordal neural plate cranial neural crest optic field |
| ammecr1.L | ammerc1 | X. laevis | Throughout NF stage 18 | pre-chordal neural plate chordal neural plate |
| ptpn3.S | X. laevis | Throughout NF stage 18 | pre-chordal neural plate chordal neural plate lateral plate mesoderm intermediate mesoderm dorsal | |
| prkca.L | pkc-alpha, pkcalpha, pkc-like 2, XPKCI | X. laevis | Throughout NF stage 18 | dorsal |
| dlx5.L | dll3, X-dll3 | X. laevis | Throughout NF stage 18 | preplacodal ectoderm anterior placodal area posterior placodal area neural crest |
| csnk2a1.S | X. laevis | Throughout NF stage 18 | pre-chordal neural plate chordal neural plate | |
| aadat.S | aminoadipate aminotransferase, kat2, katii | X. laevis | Throughout NF stage 18 | otic vesicle dorsal neural plate mesoderm |
| sall1.L | LOC108715370, sal-1, sal1, sall1-a, sall1-b, sall1b, sal-like 1, spalt-like 1, tbs, znf794 | X. laevis | Throughout NF stage 18 | floor plate posterior placodal area |
| lrrn1.L | figler3, lrrn1-a, lrrn1-b, nlrr-1, nlrr-6, XlNLRR-6, xnlrr-1 | X. laevis | Throughout NF stage 18 | pre-chordal neural plate chordal neural plate optic field cranial neural crest |
| fst.L | foll, follistatin, xfs | X. laevis | Throughout NF stage 18 | floor plate chordal neural plate |
| prkd1.L | pkcm, pkc-mu, pkd, prkcm, protein kinase C, mu | X. laevis | Throughout NF stage 20 | mesoderm lateral plate mesoderm intermediate mesoderm cranial neural crest |
| olfm4.L | tiarin | X. laevis | Throughout NF stage 20 | cranial neural crest |
| wnt11.S | wnt11a, Wnt11-R, Wnt11r, WNT11-related | X. laevis | Throughout NF stage 20 | pre-chordal neural plate chordal neural plate neural crest trunk neural crest |
| dach1.S | dach | X. laevis | Throughout NF stage 20 | lateral plate mesoderm intermediate mesoderm mesoderm |
| dach1.S | dach | X. laevis | Throughout NF stage 28 | hyoid arch retina midbrain pineal gland hindbrain foregut |
| lrrn1.L | figler3, lrrn1-a, lrrn1-b, nlrr-1, nlrr-6, XlNLRR-6, xnlrr-1 | X. laevis | Throughout NF stage 28 | pharyngeal arch branchial arch lateral plate mesoderm otic vesicle eye proctodeum forebrain hindbrain roof plate cardinal vein |
| olfm4.L | tiarin | X. laevis | Throughout NF stage 28 | mandibular arch hyoid arch proctodeum |
| prkca.L | pkc-alpha, pkcalpha, pkc-like 2, XPKCI | X. laevis | Throughout NF stage 28 | head region |
| snrpe.L | b-raf, sm-e, sme | X. laevis | Throughout NF stage 28 | pharyngeal arch hyoid arch branchial arch lateral plate mesoderm otic vesicle eye forebrain hindbrain retina |
| dlx5.L | dll3, X-dll3 | X. laevis | Throughout NF stage 28 | pharyngeal arch mandibular arch hyoid arch branchial arch otic vesicle dorsal fin margin ventral fin margin hatching gland forebrain diencephalon |
| wnt11.S | wnt11a, Wnt11-R, Wnt11r, WNT11-related | X. laevis | Throughout NF stage 28 | pharyngeal arch otic vesicle midbrain hindbrain spinal cord visceral pouch heart |
| ammecr1.L | ammerc1 | X. laevis | Throughout NF stage 29 and 30 | pharyngeal arch branchial arch pronephric duct otic vesicle eye brain spinal cord |
| zeb2.S | sip1, smad interaction protein 1, XSip1, XZfhx1b, zfhx1b | X. laevis | Throughout NF stage 29 and 30 | eye pronephric mesenchyme cranial placode epibranchial placode facial epibranchial placode lateral line placode hindbrain spinal cord |
| csnk2a1.S | X. laevis | Throughout NF stage 29 and 30 | pharyngeal arch mandibular arch hyoid arch branchial arch otic vesicle eye brain forebrain midbrain hindbrain spinal cord | |
| kansl2.S | flj20436 | X. laevis | Throughout NF stage 29 and 30 | pharyngeal arch branchial arch pronephric kidney pronephric duct otic vesicle eye forebrain spinal cord |
| ptpn3.S | X. laevis | Throughout NF stage 29 and 30 | chordal neural plate otic vesicle forebrain midbrain | |
| spdl1.L | flj20364, spindly | X. laevis | Throughout NF stage 29 and 30 | pharyngeal arch branchial arch pronephric kidney otic vesicle forebrain midbrain hindbrain spinal cord ciliary marginal zone roof plate |
| stk3.S | LOC108719348, mst2, xstk3 | X. laevis | Throughout NF stage 29 and 30 | dorsal fin |
| prkd1.L | pkcm, pkc-mu, pkd, prkcm, protein kinase C, mu | X. laevis | Throughout NF stage 29 and 30 | pharyngeal arch mandibular arch hyoid arch branchial arch pronephric kidney pronephric duct otic vesicle head region roof plate |
| aadat.S | aminoadipate aminotransferase, kat2, katii | X. laevis | Throughout NF stage 33 and 34 | otic vesicle forebrain intersomitic region eye pharyngeal arch branchial arch pronephric kidney pronephric duct glomus roof plate lateral plate mesoderm |
| sall1.L | LOC108715370, sal-1, sal1, sall1-a, sall1-b, sall1b, sal-like 1, spalt-like 1, tbs, znf794 | X. laevis | Throughout NF stage 33 and 34 | otic vesicle eye tail bud midbrain midbrain-hindbrain boundary lens dorsal fin epibranchial placode |
| fst.L | foll, follistatin, xfs | X. laevis | Throughout NF stage 33 and 34 | pronephric kidney pronephric duct otic vesicle midbrain hindbrain spinal cord diencephalon visceral pouch |
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